F08501

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08501

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08501

Determination of introduced cDNA(s)

  • RAFL09-21-N21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-N21 - Resource: pda05612

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-21-N21 - full reading
    AAAGAGCGAG AAATGGAGAT CTCGAAGGTT TAATAACGTC TTCAGGGAAA 
    AAAGCTTTGG TTGCCGCCAC CGACTTAGTC GGACTTACCT CCGGGAAGCT
    TCGCGAACTC TCGATTCGTC GATCTAAGGA ACCTTCCGTT GTTTATTTCG
    ACGAAGGAGA TAATAAGGAT AACGTCGTCG CAACGCCTGA GGTTAGATCT
    GTTAACACCA AACCTAGCGA GAAAATCGTT GATTCGAAAG TCCTGAGAAA
    TGAATTTAGC GATGAAGTTA AGAATTCAAA TAGAGAAGGT GAGATTAAGG
    TTTCAGGCGT TGAAGCGGGA GAGATTATTG GAGTTAGAGC TGTTGAATCA
    GGTACGGTAA CGGAAGCATC ATCTCCGTCG GAGGTAGTAC CTCCGGTGAA
    GAGACGGAGA CCTAGAGAGA GGAAGGTTCC TTCAACTCCT ATGGCAAGAG
    CTTATGGGTT TTTTAATTTA GGAGCTGCTC TTGCTTGGGG AGCTGTTAAA
    GAATCTACGT ATAGGATGGT AAATGGGACA CCAATGACAC CAGACAATCA
    GCCTGCGTTA TCGTCTTTGA TGTCTAAGGA AAATGCTGAA AGATTGGCTC
    TTGGATTGTG TGAAATGCGT GGAGCTGCTC TTAAAGTTGG CCAAATGTTG
    AGTATACAGG ACGAGAGTCT CGTTCCTGCT CCGATCTTGA ATGCTCTGGA
    ATATGTGCGT CAAGGTGCTG ATGTGATGCC AAGGAGTCAA CTTAATCCAG
    TTTTGGATGC TGAGTTAGGT TCCAATTGGC AATCCAAGTT GACTAGTTTT
    GATTATGAAC CGCTAGCGGC AGCGAGTATT GGTCAGGTGC ACAGAGCTGT
    TACTAAAGAT GGATTAGAAG TTGCAATGAA GATTCAGTAC CCTGGCGTTG
    CCAACAGCAT TGAAAGTGAT ATTGAAAATG TCAGACGCTT GTTAAATTAT
    ACAAATCTAA TTCCAAAGGG ACTGTTTCTA GACAGAGCTA TAAAGGTTGC
    CAAAGAAGAG TTGGCGCAGG AGTGTGACTA TGAAATCGAA GCAGTCAGTC
    AAAAGCGCTT TCGTGATTTG CTTTCAGACA CTCCAGGGTT TTATGTGCCG
    CTTGTGGTAG ATGAGACTTC AAGCAAAAAG ATTCTAACCA CTGAACTTAT
    ATCTGGGATC CCCATTGATA AAGTAGCGTT GTTAGATCAG AAAACACGAG
    ATTATGTTGG GAGGAAGATG CTAGAACTCA CTTTGAAGGA GCTCTTTGTC
    TTCCGCTTTA TGCAGACGGA TCCAAACTGG GGTAACTTCT TATACAATGA
    AGCCACAAAG ACAATAAATC TTATCGATTT CGGAGCAGCT CGTGATTACC
    CCAAGAAATT CGTCGATGAC TATCTACGAA TGGTGATGGC ATGTGCAGAA
    AAAGACAGTG AAGGAGTGAT TGAAATGTCT AGGAGACTCG GGTTCTTAAC
    CGGAGATGAA TCAGATGTAA TGCTAGACGC TCATGTCCAA GCCGGTTTCA
    TAGTGGGTCT ACCTTTTGCA GAACCCGGTG GCTATGCTTT CCGAACCAAC
    AACATTGCTT CTAGTATCTC CAATTTAGGA GCAACCATGT TGAAACATAG
    ACTCAGTCCA CCACCCGATG AAGCCTATAG CCTTCACCGT AAATTATCCG
    GCGCTTTCTT GGCTTGTATC AAGCTTGGAG CCACCGTCCC TTGCCGTGAT
    CTATTGCTCC AAGTTTACAA CAAGTATCAG TTCGATGATG AGCCACAAGA
    TCCCGTAGTA GCTACAAGCT CTGTTTCTTC ATAGCTCCCT CATACACACA
    CACTACATTA ATGATTTTTT CTCGTCCCCT TGTAGGGAGT ATAAAACGAT
    TCTTTCTTTG GTACACCTTC GAGTTTAATT TAGTATAATT TTTTCAATAA
    TGTAAAATGT TAAATATTGC

    Gene models with high sequence identity

    1. AT4G01660.1 [+] show detail - ABC transporter 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 0.000000012
    HMMPanther UBIQUINONE BIOSYNTHESIS PROTEIN AARF(E.COLI)/ 3.8e-138
    HMMPanther CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-REL 3.8e-138
    HMMPfam ABC-1 1.4e-35

    See the detailed result >

    AT4G01660.1

    Model type
    Protein coding
    Short Description
    ABC transporter 1
    Curator Summary
    Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant
    Computational Description
    ABC transporter 1 (ABC1); CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 8616 Blast hits to 8614 proteins in 1786 species: Archae - 122; Bacteria - 4355; Metazoa - 377; Fungi - 416; Plants - 667; Viruses - 9; Other Eukaryotes - 2670 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR