F08501

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08501

Determination of introduced cDNA(s)

RAFL09-21-N21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-21-N21 - Resource: pda05612

full reading [+] show sequence

AAAGAGCGAG AAATGGAGAT CTCGAAGGTT TAATAACGTC TTCAGGGAAA 
AAAGCTTTGG TTGCCGCCAC CGACTTAGTC GGACTTACCT CCGGGAAGCT 
TCGCGAACTC TCGATTCGTC GATCTAAGGA ACCTTCCGTT GTTTATTTCG 
ACGAAGGAGA TAATAAGGAT AACGTCGTCG CAACGCCTGA GGTTAGATCT 
GTTAACACCA AACCTAGCGA GAAAATCGTT GATTCGAAAG TCCTGAGAAA 
TGAATTTAGC GATGAAGTTA AGAATTCAAA TAGAGAAGGT GAGATTAAGG 
TTTCAGGCGT TGAAGCGGGA GAGATTATTG GAGTTAGAGC TGTTGAATCA 
GGTACGGTAA CGGAAGCATC ATCTCCGTCG GAGGTAGTAC CTCCGGTGAA 
GAGACGGAGA CCTAGAGAGA GGAAGGTTCC TTCAACTCCT ATGGCAAGAG 
CTTATGGGTT TTTTAATTTA GGAGCTGCTC TTGCTTGGGG AGCTGTTAAA 
GAATCTACGT ATAGGATGGT AAATGGGACA CCAATGACAC CAGACAATCA 
GCCTGCGTTA TCGTCTTTGA TGTCTAAGGA AAATGCTGAA AGATTGGCTC 
TTGGATTGTG TGAAATGCGT GGAGCTGCTC TTAAAGTTGG CCAAATGTTG 
AGTATACAGG ACGAGAGTCT CGTTCCTGCT CCGATCTTGA ATGCTCTGGA 
ATATGTGCGT CAAGGTGCTG ATGTGATGCC AAGGAGTCAA CTTAATCCAG 
TTTTGGATGC TGAGTTAGGT TCCAATTGGC AATCCAAGTT GACTAGTTTT 
GATTATGAAC CGCTAGCGGC AGCGAGTATT GGTCAGGTGC ACAGAGCTGT 
TACTAAAGAT GGATTAGAAG TTGCAATGAA GATTCAGTAC CCTGGCGTTG 
CCAACAGCAT TGAAAGTGAT ATTGAAAATG TCAGACGCTT GTTAAATTAT 
ACAAATCTAA TTCCAAAGGG ACTGTTTCTA GACAGAGCTA TAAAGGTTGC 
CAAAGAAGAG TTGGCGCAGG AGTGTGACTA TGAAATCGAA GCAGTCAGTC 
AAAAGCGCTT TCGTGATTTG CTTTCAGACA CTCCAGGGTT TTATGTGCCG 
CTTGTGGTAG ATGAGACTTC AAGCAAAAAG ATTCTAACCA CTGAACTTAT 
ATCTGGGATC CCCATTGATA AAGTAGCGTT GTTAGATCAG AAAACACGAG 
ATTATGTTGG GAGGAAGATG CTAGAACTCA CTTTGAAGGA GCTCTTTGTC 
TTCCGCTTTA TGCAGACGGA TCCAAACTGG GGTAACTTCT TATACAATGA 
AGCCACAAAG ACAATAAATC TTATCGATTT CGGAGCAGCT CGTGATTACC 
CCAAGAAATT CGTCGATGAC TATCTACGAA TGGTGATGGC ATGTGCAGAA 
AAAGACAGTG AAGGAGTGAT TGAAATGTCT AGGAGACTCG GGTTCTTAAC 
CGGAGATGAA TCAGATGTAA TGCTAGACGC TCATGTCCAA GCCGGTTTCA 
TAGTGGGTCT ACCTTTTGCA GAACCCGGTG GCTATGCTTT CCGAACCAAC 
AACATTGCTT CTAGTATCTC CAATTTAGGA GCAACCATGT TGAAACATAG 
ACTCAGTCCA CCACCCGATG AAGCCTATAG CCTTCACCGT AAATTATCCG 
GCGCTTTCTT GGCTTGTATC AAGCTTGGAG CCACCGTCCC TTGCCGTGAT 
CTATTGCTCC AAGTTTACAA CAAGTATCAG TTCGATGATG AGCCACAAGA 
TCCCGTAGTA GCTACAAGCT CTGTTTCTTC ATAGCTCCCT CATACACACA 
CACTACATTA ATGATTTTTT CTCGTCCCCT TGTAGGGAGT ATAAAACGAT 
TCTTTCTTTG GTACACCTTC GAGTTTAATT TAGTATAATT TTTTCAATAA 
TGTAAAATGT TAAATATTGC

Gene models with high sequence identity

AT4G01660.1 [+] show detail - ABC transporter 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Protein kinase-like domain	1.2e-08
HMMPanther	UBIQUINONE BIOSYNTHESIS PROTEIN AARF(E.COLI)/	3.8e-138
HMMPanther	CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-REL	3.8e-138
HMMPfam	ABC-1	1.4e-35

See the detailed result >

AT4G01660.1

Model type: Protein coding
Short Description: ABC transporter 1
Curator Summary: Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant
Computational Description: ABC transporter 1 (ABC1); CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 8616 Blast hits to 8614 proteins in 1786 species: Archae - 122; Bacteria - 4355; Metazoa - 377; Fungi - 416; Plants - 667; Viruses - 9; Other Eukaryotes - 2670 (source: NCBI BLink).
Link: InterPro Scan - TAIR