F08535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08535

Determination of introduced cDNA(s)

RAFL09-65-P06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-65-P06 - Resource: pda09884

full reading [+] show sequence

GAAACTCTGT TTTAGACTCT TTTATTTGTT AGACTTTTTT GTTTGTTTCG 
TCGTTGTTGT TTTTTGACCA AACCACCATG CGATTCGTCG CGCCACCGCC 
TCGTTCCGGC GATAACTCAC CGTCACCTTC ACCATCTTCC GGTATATCCG 
AAGAGATTCT CTCCCGTTCT TCGGATCCTC CTTTAGAGTT TAGTCCTCCA 
TTGATCGCCA TGGTGGTGGT TCTAGCCGCC GCTTTTCTAT TCGTAACTTA 
CTCTCGTCTC ATCTCCCGCC GTTTTCTTTC ACCTCTATTC CGTCGTTTTA 
GAAGGTGGCG ATGCCGTCGA CGCCGTCTCC TTCACTTATC TTCAGCTTCC 
TCTGCTTCAA CTTCATCCTC CGATCTCCGA TCATTTTCAC CTTTCCCTTT 
CGACTCTTTT CATTACTCTT CTTACTCACC TTACGGATTA GACGATTCCG 
TTATCAAAAC TTTACCGCTG TTTCTCTACT CCGCCGCTGC TTGCACCGGA 
AAACCCGCGG TGGGGAAAAC CTCCGCCGCC AATTGCAGAG ATTGTGCTGT 
TTGTTTGTTG GAATTCGAAG AAGGTGATTA TGTACGAACA CTTCCGTTAT 
GCTTCCATGC TTTTCACCTT GAATGCATCG ATGAATGGCT CCGATCTCAC 
CCTAACTGTC CGTTATGCCG TACGGCGATT CTCGGATCCG CCGGAGTGTT 
AACGCCTATG TCGCCGTTCG TTCCGTTAAT GGCTCCTCGA ATTCGTCCGA 
GTCTCGATGA TGAAGAGAAT AACGCGATCA TCATCCGCGG CGAAATCACA 
CCGTCGCGGA GCAATTGGAA CACAATCGCT GCCGATACGA CGAACGATCA 
GGAGATCAGA GCGTCGGTGG AAGAGCAATC ATCACCGGCG ATTTCTCGGT 
TCCGGGAGCT GAAGAGATCG TACTCGTTCG AATGCGAGAG AGAATCTGAA 
TCAGAGAGAG TAACGATGGA GCCAGCGACG GTGTCTCCAT GGAGATACCG 
GAGATCTACA TGGAACAAAC GTCAATCACC GTTCGGAAAC CTAATATCGA 
AATCAAGAGT GTTCTCGTTC CGTTACTACA GAAGCACGAA ATCACCGTTC 
TTCCGACGGA GATCATCGGC GGGAGTGTTT TACCCGATAT CAGAACGGAT 
TCCAGCGACG GGAAGCTCAT CGCGGCGAAC GAAATCGATG ACGAGTCCGA 
TGTTCTTCAG AACAGCACCG CACTCATCGA GCCGGTTAAG ATGCGGAGAT 
CCAGAGGCAC TGTTATCGCC GGAGAGATGG AGAAGAAGAG ACACGTGTAG 
GGCAGAGATG TAAGATGAAA TTTGGACGGT GGTGATGATA AAAAGAAATA 
TTGAAGTGGA AGGAGAGAGC ATTAATGGAA TGTGGGGTTT AAGCATTTAA 
TGGAATTAAA ATGAACGAAA CAGAAGAAGA TAGAGAGATT CAGAAATTGC 
TCAGCTGCTC ACATTCACAA CAAGACAAAA GACGCCAAGA CGATGAAGGT 
TTTGGAGCCT GTACGACGGC GTTTTGGCTG ATGATTCGTT TTTTCCTCTC 
TTTGGAGTTA TCAAAATGCA TTAACTTCAA AAGCTGCCAA AGTTATCATA 
GAAACGAAAG TCAACAACAC ATTGAATTTC GTTTCTATAA TAACTTTACA 
TCGTCGGTGG CTTTACTGTT TTCTGTTACC GAATTTTATG TTCAAACTTT 
TAGCTGTCGA TTTAATTTTT GACCAAATTT

Gene models with high sequence identity

AT3G18930.1 [+] show detail - RING/U-box superfamily protein
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Zinc finger, RING-type	5.3e-06
Gene3D	no description	5.7e-14
superfamily	RING/U-box	5.5e-15
ProfileScan	Zinc finger, RING-type	12.179
HMMPfam	Zinc finger, C3HC4 RING-type	2e-06
HMMPanther	RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D	6.3e-16

See the detailed result >

AT3G18930.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 8769 Blast hits to 8742 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2146; Fungi - 644; Plants - 4854; Viruses - 63; Other Eukaryotes - 1062 (source: NCBI BLink).
Link: InterPro Scan - TAIR