F08551

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08551

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08551

Determination of introduced cDNA(s)

  • RAFL07-15-M09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-15-M09 - Resource: pda04324

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-15-M09 - full reading 
    GTTGGCTGTG ACTGGATCCT CCCCCTTTCT TCCGGGTTCT TGTCGTGCGT 
    ATCCGGCGAA ATGAGAAGTG TGTAGAGCAA ACAGAGGTGA AGCTGAGAAG 
    TTGATCACTC ACTCAATCTA AGAGTGCATG TAATTGAAGC AGCAACCATT 
    TCTACTTTTC GAATCTTCTC TGCTTCAATC CACACCCAAG GGTTTCAAGG 
    AATATGGGTC TTTCCCGTTA GCTAAAGATA ATTAATTTTG TGTCCGATGG 
    CGTCCACTCG TAAACCCAGT GGTCATGGAG CTGAAGTCGA AGCTCAGAAG 
    CGCTCCTCTT CGAATAGTAG TACTAAGTCA GCCAAAGCCG AGACTTTTGA 
    GCCGATGCAA TTACAAAGAT CAGTAACAAA CCCAAGAGCT GTTGGAATTC 
    CGGAGAGTAA ACGGTTGCCA GAGTCTTTTA GGAAGCGATC TAGCGACCCG 
    GCTGTTTGTA AACCCGATTT CAGCTCCCTA TCCACTGTTC TTGAGCATGT 
    AGATTCATTG ACCATTGATG AAAAGAAAAC ATCTGGCTTT GGCAGCGTCA 
    AGACCAGCTC TGCTTCAGCC AAATTGAGTG ATGGTACGAG CAGTCTTGGC 
    AAGACTAGTG GAAGTGCCAA GCTAAGTGGC CGCCTTGATT TCATGGAGAG 
    TGGCAAGAGC AGTATCTGCA GAGGAAGCAC AAGCAGTGAT GTGAGTGACG 
    AGAGTAGCTG CAGCAGCTTT AGTAGCACTG TCAACAAACC CCACAAGGCC 
    AATGACTTAA GATGGGAAGC AATCCAGGCT GTTAGGGTTC GTGATGGGCT 
    TTTAGGTCTT AGTCATTTCA GGCTCCTTAA GCGGTTAGGC TGCGGGGACA 
    TCGGGAGTGT TTATCTCTCT GAGCTGAGCG GGACTAAGTG TTACTTTGCT 
    ATGAAGGTTA TGGACAAGAC ATCCCTTGCC AGTCGCAAGA AGCTTCTCCG 
    AGCTCAGACT GAAAGAGAGA TTCTCCAGTC TTTGGATCAT CCATTTCTCC 
    CTACCCTCTA CACTCACTTT GAGACTGAGA AATTCTCATG CCTGGTGATG 
    GAATTCTGTC CCGGAGGAGA TTTGCATACT CTCAGGCAAC GCCAGCCGGG 
    GAAACATTTT TCTGAGCAAG CGGTAAAATT TTACATAGCA GAGTCATTGT 
    TAGCTTTGGA ATACCTGCAC ATGCTTGGGA TTGTGTATCG AGATCTTAAG 
    CCTGAAAACG TTCTAGTTCG AGAAGACGGA CATATAATGC TCTCTGATTT 
    TGACCTTTCT CTCCGATGTC TTGTCAGCCC GACTCTAGTG AAATCTGCCG 
    CCATCGAGTC AGATCCTTTA CGGAAAAACG TTTACTGTGT GCAGCCCGCT 
    TGCATTGAGC CCTCCTGCAT TCAACCGTCT TGCACCGTCC CCACCACTTG 
    CTTCTCCCCA CGTTTGTTCT CAAGCAAATC TAAGAAGGAC CGTAAACCCA 
    AGAATGACAC CGCAAATCAA GTTAGGCCAT TGCCAGAGCT GGTAGCCAAG 
    CCAACCGATG CACGTTCCAT GTCATTTGTG GGCACACACG AGTACTTGGC 
    CCCAGAGATC ATCAAAGGCG AAGGGCATGG CAGTGCAGTG GATTGGTGGA 
    CTTTTGGGAT ATTCCTTTAC GAGCTTCTCT TTGGGAGAAC GCCCTTCAAG 
    GGCTCAGGAA ACCGACAAAC ACTGTTCAAT GTGGTGGGTC AGCCTCTGCG 
    GTTCCCAGAA ACGCCTGTGG TGAGTTTTGC AGCGAGAGAC CTCATCCGGG 
    GCTTGCTCAT GAAGGAGCCG CAGCAGCGGC TGGGGTTCAA ACGGGGAGCC 
    ACTGAGGTTA AGCAGCACCC TTTCTTCGAA GGTGTGAACT GGGCTTTGAT 
    TCGGTGTGCG ACTCCCCCGG AAATACCAAA GCCGGTTGAG CTGGAAAAAG 
    GAGCTGTGAG TGTTGCAGAG GCACCATCAA GCCAGAAGAC AGCAGCGGGT 
    TTGGTTCTGA ATGCTCAGAA AGGGTCTGAT AACTATTTGG AATTTGATTT 
    CTTCTAGCGT TACGGTTAGA CATATGGTAC TCTATTCTTC CTTAGAAGAC 
    TATGTGATAA AAGATGATCA GGTGTTGATG TTTCGCTCAT TATAGATTGC 
    CATGAATTGT AAGCTTGTTT GTATGCATAA GCTGCTGTAG TTTATAAAAA 
    TGTTGTAACT GTTTCTCGTA ACCTTATTAG TTGTTATCAG AGTTCCTTTT 
    TACTCGCTCT ATCCAAACAC AAAACATTAC ATCAAATGTA TTGTCTCTGC 
    A

    Gene models with high sequence identity

    1. AT5G47750.1 [+] show detail - D6 protein kinase like 2
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 5.5e-86
    HMMSmart Tyrosine-protein kinase, catalytic domain 7.7e-07
    superfamily Protein kinase-like domain 2e-82
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPanther NONPHOTOTROPIC HYPOCOTYL PROTEIN 1(PHOTOTROPI 5.1e-247
    HMMPanther SERINE/THREONINE PROTEIN KINASE 5.1e-247
    HMMPfam Serine/threonine-protein kinase-like domain 2.5e-35
    HMMPfam Serine/threonine-protein kinase-like domain 2.3e-20
    Gene3D no description 6.1e-58
    ProfileScan Protein kinase, catalytic domain 44.103

    See the detailed result >

    AT5G47750.1

    Model type
    Protein coding
    Short Description
    D6 protein kinase like 2
    Computational Description
    D6 protein kinase like 2 (D6PKL2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 1 (TAIR:AT4G26610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR