F08619

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08619

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08619

Determination of introduced cDNA(s)

  • RAFL06-71-K24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-71-K24 - Resource: pda03372

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-71-K24 - full reading
    GCCTACTGCC TAGCCATTAC CCTCTCTCTC TCTTTATAAT AAATAACATC 
    ACACATCACT TACATTCACT CTTCACAAAG ATATTATAGA GTGTGAGAGA
    GAGACACTCT TGTTTCATCT TCAACTTCCA CTACCTTTGC AAGATTCTAC
    CTGAGATAGA TGGCGAAGTT CCGACAAATG GGTTCATCAA TCTTCTTCCT
    CTTTCTTATC ATAATCTCAT TATGTTCCGC CCACAAAGAA GCGTTTTCTT
    CAACTGATCT TGTTCAAATG GAGTGCTTGA GAGTCCCACC GTTAGAGTTT
    GCTGAAGCGG CCAAAACCGT CGTCGACGCT ATAACAAAAG CGGTAGCTAT
    AGTGTCCAAG TTCGACAAGA AAGCCGGGAA GTCGCGAGTC TCCAATGCGA
    TTGTTGATTG TGTTGATCTT CTTGATTCTG CCGCCGAAGA GCTTTCTTGG
    ATCATCTCTG CCTCTCAATC CCCCAACGGT AAAGACAATA GCACAGGAGA
    CGTGGGTTCG GATCTAAGGA CATGGATAAG CGCCGCACTT TCTAACCAGG
    ACACATGTCT TGACGGTTTC GAGGGTACTA ATGGAATTAT CAAAAAGATA
    GTGGCCGGTG GTCTTAGCAA GGTTGGTACG ACCGTTCGGA ATTTACTAAC
    GATGGTTCAC TCTCCTCCCT CTAAGCCCAA ACCTAAGCCC ATTAAGGCCC
    AGACAATGAC GAAAGCTCAT AGTGGCTTCA GTAAGTTCCC CTCATGGGTT
    AAACCCGGTG ATCGGAAGTT GTTGCAAACT GATAACATAA CGGTTGCTGA
    CGCGGTTGTA GCCGCAGACG GGACCGGAAA TTTCACGACG ATAAGTGACG
    CGGTGTTGGC TGCACCGGAC TATAGTACCA AAAGATATGT CATACATGTA
    AAAAGAGGTG TGTATGTAGA GAATGTGGAG ATTAAAAAGA AGAAATGGAA
    CATTATGATG GTTGGTGACG GCATCGATGC CACCGTGATC ACGGGTAACC
    GGAGTTTCAT CGACGGCTGG ACTACTTTCC GATCTGCTAC ATTTGGTAAG
    TCCAAATTTA TAATATCTTT CACCTAGTAT TTTTTGTTTT CTTACTATTA
    ATGAAGATTA TGAATTGGTT ATAAAACTAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT3G43270.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Pectinesterase inhibitor 1.89999859865865e-20
    PatternScan Pectinesterase, active site 0
    HMMPfam Pectinesterase, catalytic 6.79999999999998e-29
    HMMTigr Pectinesterase inhibitor 0.799999996793849
    HMMPfam Pectinesterase inhibitor 4.80000000000001e-19
    superfamily Pectin lyase fold/virulence factor 1.2e-27
    Gene3D Pectin lyase fold 1.50000306971087e-23
    superfamily Pectinesterase inhibitor 0.000000011

    See the detailed result >

    AT3G43270.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily
    Computational Description
    Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 44 (TAIR:AT4G33220.1); Has 2924 Blast hits to 2864 proteins in 331 species: Archae - 6; Bacteria - 617; Metazoa - 1; Fungi - 199; Plants - 2076; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR