F08632

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08632

Determination of introduced cDNA(s)

RAFL06-83-F21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-F21 - Resource: pda07720

full reading [+] show sequence

ATCTTCTCAA ACTAAATCAA TTAAAGAGGT TTCTTCTTAT AGAAATGAAT 
TTCTCTTATT CTTCCTTGTC AACTTGGACA ACCCTAATGA CATTGGGTTG 
TCTTCTGCTT CATTCATCCA TTTCCAGTGC TCAGCTAACC CCAACTTTCT 
ATGACAATAC ATGTCCAAGC GTCTTTACCA TCGTACGGGA TACCATAGTA 
AACGAGCTAA GATCGGATCC TCGTATCGCT GCAAGCATCC TTCGTCTTCA 
CTTCCACGAC TGTTTCGTCA ATGGCTGTGA TGCATCGATC CTGTTAGACA 
ACACAACATC CTTTCGAACA GAGAAAGATG CGGCTCCAAA CGCAAACTCG 
GCTCGAGGAT TTCCAGTGAT CGATAGAATG AAAGCAGCAG TAGAGACAGC 
ATGTCCAAGG ACTGTTTCAT GCGCAGATAT ACTTACCATC GCAGCTCAAC 
AAGCTGTAAA TTTGGCAGGA GGTCCTTCTT GGAGGGTTCC TTTGGGGAGA 
AGAGATAGCT TACAAGCATT CTTTGCTCTC GCTAATACAA ATCTTCCCGC 
TCCATTCTTC ACTCTCCCAC AACTTAAGGC CAGTTTTCAA AATGTTGGAC 
TTGACCGTCC CTCTGATCTC GTTGCACTCT CTGGTGGTCA CACATTTGGT 
AAAAACCAGT GCCAATTTAT TATGGATAGA CTATACAACT TTAGCAACAC 
TGGTTTACCC GACCCTACTC TTAATACTAC ATACCTCCAG ACACTTCGTG 
GACAATGTCC CCGCAATGGT AACCAGACCG TCTTAGTTGA TTTCGATCTA 
CGCACACCGA CGGTTTTTGA CAATAAATAC TATGTGAATC TGAAAGAGCT 
AAAGGGACTT ATCCAGACGG ATCAAGAGTT GTTTTCCAGC CCTAATGCCA 
CTGACACAAT CCCCTTGGTG AGAGAATACG CTGATGGCAC TCAAAAATTC 
TTCAATGCTT TTGTGGAAGC AATGAATAGA ATGGGAAACA TTACACCTCT 
CACTGGAACT CAAGGACAAA TCAGACAGAA TTGTAGGGTG GTTAACTCCA 
ACTCGCTGCT ACATGATGTG GTCGAAATCG TTGACTTTGT CAGCTCTATG 
TAACATAACG TTGTCTCGAT ATATGTGGCA ACCAAAAATA TGTTTTATGA 
AATAAAGTGT TCTCAAAATG TTTATGAAGA ACATTTCGTC TGAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

AT3G32980.1 [+] show detail - Peroxidase superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Plant peroxidase	6.4e-68
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.2e-34
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.2e-34
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.2e-34
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.2e-34
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.2e-34
ProfileScan	Haem peroxidase, plant/fungal/bacterial	81.054
superfamily	Haem peroxidase	6e-114
HMMPfam	Haem peroxidase, plant/fungal/bacterial	5.4e-72
PatternScan	Peroxidases heam-ligand binding site	0
PatternScan	Peroxidase, active site	0
Gene3D	no description	1.4e-62

See the detailed result >

AT3G32980.1

Model type: Protein coding
Short Description: Peroxidase superfamily protein
Computational Description: Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4309 Blast hits to 4278 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 49; Plants - 4212; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link: InterPro Scan - TAIR