F08702

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08702

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08702

Determination of introduced cDNA(s)

  • RAFL05-16-H03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-H03 - Resource: pda07353

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-H03 - full reading 
    ATCCATCTCT CAAACACCAT TTTTGGAAAC ACCATTTCAT ATTCCTTAAA 
    CTTTTCCATT TTAGTATCAT TTCATATTCA TTGATATGGA TGTCTCCAAC 
    ACGATGCTCC TTGTAGCTGT TGTTGCAGCT TACTGGCTAT GGTTCCAGCG 
    GATCTCAAGG TGGCTAAAGG GTCCACGTGT TTGGCCAGTT TTGGGCAGTC 
    TTCCGGGTCT GATCGAGCAG CGTGACCGTA TGCACGACTG GATCACTGAG 
    AACCTCCGTG CGTGTGGCGG CACTTATCAG ACATGTATCT GCGCCGTACC 
    TTTCTTGGCA AAAAAGCAAG GTCTCGTGAC CGTCACGTGC GATCCCAAGA 
    ACATCGAACA CATGCTCAAG ACCAGGTTCG ACAACTACCC TAAAGGTCCT 
    ACGTGGCAAG CCGTGTTCCA TGACTTCCTC GGCCAAGGTA TCTTCAACTC 
    CGACGGTGAC ACTTGGCTCT TCCAGCGTAA AACCGCCGCT CTTGAATTCA 
    CCACCAGGAC GTTGAGGCAA GCGATGGGTC GGTGGGTGAA CCGGGGAATC 
    AAGCTCCGGT TTTGTCCAAT TCTCGAAACG GCTCAGAACA ATTACGAGCC 
    GGTTGATCTC CAAGACTTAA TACTACGGCT CACATTCGAC AACATTTGCG 
    GTTTAGCATT CGGTAAAGAC ACTCGAACCT GCGCACCGGG ACTTCCCGAG 
    AACGGTTTCG CCTCGGCTTT CGACCGAGCC ACCGAAGCTT CTCTCCAGCG 
    GTTTATTCTA CCAGAGTTTC TATGGAGGCT GAAGAAATGG CTTGGACTCG 
    GCTTAGAAGT CAGCTTGAGC CGGAGCCTAG GAGAGATCGA TGGGTATTTA 
    GATGCTGTCA TTAATACACG TAAGCAAGAA TTGCTGAGTC AGCGAGAGAG 
    TGGGGTCCAG CGTCACGACG ATCTCCTCTC TCGTTTCATG AAGAAGAAAG 
    ACCAGTCGTA CAGCGAGACG TTCTTACGAC ACGTGGCGCT TAACTTCATC 
    CTAGCTGGAC GTGACACGTC ATCAGTAGCG TTGAGCTGGT TTTTCTGGCT 
    CATCACGACG CATCCGACGG TTGAGGATAA GATCGTCCGC GAGATATGCT 
    CCGTTCTGAT TGAGACACGT GGAACCGATG TATCGTCGTG GACGGCGGAG 
    CCGTTGGAAT TCGATGAGGT CGACCGGTTG GTTTACCTGA AGGCCGCGCT 
    CTCTGAGACG TTGAGGCTTT ACCCGTCGGT GCCGGAAGAT TCAAAGCACG 
    TCGTGAACGA CGATATCTTA CCGGACGGAA CTTTCGTACC GGCGGGATCG 
    TCGGTGACTT ATTCGATCTA CGCGGCGGGG AGGATGAAGA GCACGTGGGG 
    AGAGGATTGC TTGGAATTCA AACCGGAGAG GTGGATCTCG CCGGACGATG 
    GAAAATTCGT GAATCACGAT CAGTACCGAT TCGTGGCGTT TAACGCCGGA 
    CCTAGGATCT GTCTAGGAAA AGATCTAGCG TATCTGCAGA TGAAGACGAT 
    CGCGGCGGCG GTTTTACTCA GGCATAGACT AACGGTGGCG CCGGGACACG 
    AGGTGGAGCA GAAGATGTCG TTGACTTTGT TCATGAAGAA CGGACTTTTG 
    GTCAACGTGC ACAAGAGGGA TTTGGAAGTG ATGATGAAGA GTCTCGTACC 
    CAAAGAGAGA AACGACGTCG TTGTTCTTAA CGGAAAATGC AACGGCGGTA 
    TCGGTGAAGG CGTCGCCGTT AATGCGGCTG TGGCGGTTGC CGTGTAATGC 
    AGCTTCTCGG GTTGATAACA TTTTTATAGT AATTAATACA TACATTTACC 
    TTTGGGTTTT GTGATTGTTG TGTAAAACAG TAAAAAAAAT GATTTCGTTG 
    TGCTATGTAA ACTTTGTAAG CAAATACTCT TCTTCCTAAA GC

    Gene models with high sequence identity

    1. AT4G00360.1 [+] show detail - cytochrome P450, family 86, subfamily A, polypeptide 2
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cytochrome P450 8e-93
    HMMPfam Cytochrome P450 1.2e-66
    superfamily Cytochrome P450 9.4e-101
    FPrintScan Cytochrome P450, E-class, group I 7.6e-12
    FPrintScan Cytochrome P450, E-class, group I 7.6e-12
    FPrintScan Cytochrome P450, E-class, group I 7.6e-12
    FPrintScan Cytochrome P450, E-class, group I 7.6e-12
    FPrintScan Cytochrome P450, E-class, group I 7.6e-12
    FPrintScan Cytochrome P450, C-terminal 1.4e-11
    FPrintScan Cytochrome P450, C-terminal 1.4e-11
    FPrintScan Cytochrome P450, C-terminal 1.4e-11
    FPrintScan Cytochrome P450, C-terminal 1.4e-11
    PatternScan Cytochrome P450, conserved site 0
    HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 5.7e-240
    HMMPanther Cytochrome P450 5.7e-240

    See the detailed result >

    AT4G00360.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 86, subfamily A, polypeptide 2
    Curator Summary
    Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.
    Computational Description
    "cytochrome P450, family 86, subfamily A, polypeptide 2" (CYP86A2); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily A, polypeptide 4 (TAIR:AT1G01600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR