F08711

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08711

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08711

Determination of introduced cDNA(s)

  • RAFL06-08-F07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-F07 - Resource: pda02880

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-F07 - full reading 
    ACAGCACCAC AAACTCCATA GCTAGCTAGA GAGTAAAAAG AACAAAGATG 
    TCGAAAGAAG TGAGCGAAGA AGGCAAAACC CACCATGGAA AAGACTACGT 
    GGATCCTCCA CCAGCTCCTC TTCTCGACAT GGGTGAGCTC AAATCCTGGT 
    CTTTCTACAG AGCTCTCATC GCTGAGTTCA TCGCTACACT CCTCTTCCTC 
    TACGTCACCG TCGCTACTGT CATCGGCCAC AAGAAGCAAA CCGGTCCTTG 
    TGACGGCGTT GGTTTACTTG GTATCGCTTG GGCTTTCGGT GGTATGATCT 
    TCGTCCTCGT CTACTGCACC GCCGGTATCT CTGGTGGTCA CATTAACCCA 
    GCTGTGACTT TCGGTCTGTT CTTGGCCCGT AAGGTCTCTT TGGTGCGAGC 
    TCTTGGTTAC ATGATAGCTC AGTGTCTTGG AGCCATTTGT GGTGTGGGTT 
    TCGTGAAAGC TTTCATGAAA ACTCCTTACA ACACTCTTGG TGGAGGAGCT 
    AACACCGTAG CTGACGGTTA CAGCAAAGGA ACTGCTCTCG GAGCTGAGAT 
    TATTGGAACT TTCGTCCTTG TTTACACCGT TTTCTCTGCA ACTGACCCTA 
    AGAGAAGCGC TCGTGACTCT CACATCCCCG TTTTGGCTCC ACTTCCAATT 
    GGATTTGCTG TGTTCATGGT GCATTTGGCT ACTATCCCCA TTACTGGAAC 
    TGGTATCAAC CCAGCTAGAA GCTTTGGTGC TGCTGTTATC TACAACAACG 
    AGAAGGCGTG GGATGACCAA TGGATCTTTT GGGTTGGTCC GTTCTTGGGA 
    GCACTAGCTG CAGCAGCTTA CCACCAATAC ATATTGAGAG CTTCAGCAAT 
    TAAGGCCTTG GGCTCGTTCC GAAGCAACGC AACCAATTAA TGAAGGCTTT 
    TTTTAAGATA ATGTCAAGAA ACAACTTTAA GATTTATATG CTTTAATTAT 
    TATTTGTTGT TCTTTTGTGT GTAATGAGAG AGATGGTGGA TTGATGTTAA 
    TTATGAAATG GCTCAGTGAC TTCTATTTCC TTCTTT

    Gene models with high sequence identity

    1. AT4G35100.1 [+] show detail - plasma membrane intrinsic protein 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Aquaporin 2.3e-86
    HMMPanther AQUAPORIN-RELATED 3e-190
    HMMPanther Major intrinsic protein 3e-190
    Gene3D Major intrinsic protein 3.1e-65
    PatternScan Major intrinsic protein, conserved site 0
    HMMPfam Major intrinsic protein 2.6e-84
    superfamily Major intrinsic protein 2.6e-62
    FPrintScan Major intrinsic protein 2.7e-70
    FPrintScan Major intrinsic protein 2.7e-70
    FPrintScan Major intrinsic protein 2.7e-70
    FPrintScan Major intrinsic protein 2.7e-70
    FPrintScan Major intrinsic protein 2.7e-70
    FPrintScan Major intrinsic protein 2.7e-70

    See the detailed result >

    AT4G35100.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 3
    Curator Summary
    a member of the plasma membrane intrinsic protein PIP. functions as aquaporin. Salt-stress-inducible MIP
    Computational Description
    plasma membrane intrinsic protein 3 (PIP3); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: anchored to plasma membrane, nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: guard cell, cultured cell, callus, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2;8 (TAIR:AT2G16850.1); Has 10883 Blast hits to 10871 proteins in 2222 species: Archae - 81; Bacteria - 5172; Metazoa - 1469; Fungi - 457; Plants - 2516; Viruses - 2; Other Eukaryotes - 1186 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR