F08720

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08720

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08720

Determination of introduced cDNA(s)

  • RAFL09-83-O17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-O17 - Resource: pda08909

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-O17 - full reading 
    TTTCGCTTAC TTGCTGAGAA AAAAGCTCCA AACTTTCTCT TATTGGGTTT 
    TTGATCAGCT CCGGAGATAA AAAAAAAAAG TATTTTCTTG AAATCGAAAT 
    CTGATCTCCA TTGAGAGTCT TGCTACTTGA TTTGGATTCC GATTTAAGGT 
    TTTCTCGAGA ATTCTTTTGC TGCAGTTATT AGATTTTGAC GAGCCGTTGA 
    TCTGGACGGA GTTCCAGATC TCCGGGTCGT GGTACCAAGG AATTAGGGTT 
    TTAGCACAAA GTTCTCGTTT TTCTGTGTAT TCGAGGGATG AAGGAGTTTT 
    CGGGTCGATG TTCGCTGCTC TAACATTTGG AGTATGAAGA TGAACATGAA 
    GAAATTTCTC AAAAAGCTTC GTATCACGCC CAATCAACGA GACGATGGTG 
    AAGGTTCAGT CTCTAACAGA AGCAATAAGT CTAGTGATGC AGAACCATCT 
    CCTTCTGATT CATTGAGGTC TCAAGATAAC TCTGAATTCA AACCCTTTTT 
    GGGTTTATCA AATTGGTTAA GCTCTGTTAC TCACAGGAAA AGCCCTTCTT 
    CTTCCAATGC CACCAATAGC AAAGAGGATG ACACTACCAT GGAACATGGT 
    GGTCCCGTTG GGTCGGAATC TGGGATGCAG GGTTTGGGTT CTAGTAGTAA 
    TTCCAAGGAT CCAGAAGTTG AAGAAGAATA TCAGATACAG TTGGCTCTAG 
    AGTTAAGTGC TAGGGAGGAT CCTGAAGCTG CTCAGATTGA GGCTATGAAG 
    CAGTTCAGCT TAGGTTCTCG TCCTTCTGCT CCCGAGAATA CTCCAGCTGA 
    ACTCATGGCA TATAGATATT GGAATTATAA CTGTCTTGGC TATGATGACA 
    AGATTGTGGA TGGTTTCTAT GACCTGTGTG GAGTAATGAA TGAATCTTCC 
    TTAAAAAGAA TACCTCCCTT AGTTGATCTT CAGGGGACAC TTGTGTCAGA 
    TGGTGTAACT TGGGATGCTG TTCTAGTGAA CAGCAGCAAA GATTCTAATC 
    TGTTGAGACT TGAACAAATG GCTCTTGATA TTGCAGCAAA ATCAAAGTCA 
    GCGTCTTCTT CAGGGTTTGT GAACAGTGAA TTGGTAAGGC AACTGGCAGT 
    TTTAGTTGCT GATTACATGG GTGGACCAGT TTTGGATCCA GATAGCACGT 
    TAAGAGCTTG GTGGAGTCTG AGCTACAGCT TGAAAGCAAC CCTCCGTAGC 
    ATGGTTCTGC CCCTGGGTTC TCTAACTATT GGATTGGCTC GTCATCGTGC 
    CTTGTTATTC AAAGTTTTGT GTGATAGTGT CGGCGTTCCT TGTCGAATAG 
    TCAAAGGACA GCAATATACC GGTTCAGATG ATGTGGCAAT GAACTCCATT 
    AAGACTGATG ATGGCAGGGA GTACATTGTT GATCTCATGG GAGATCCAGG 
    CACGCTTATC CCCGCTGATG CAGCTGGACT ACAAATGGAC TTTGATGATT 
    CTGTCTACTC TGCCAGTCCC AGAGATGTTG ATTCATCTCA TGTAGCTTCT 
    TCCAGCAGTG GGGTCGAGAG CTCAATTGAA GAACACACAG AATCTTGGTC 
    AGCGGAACAT CGTTCTAGGA CCAAGGGTTC CCGGGAGGAA AACCAATCTG 
    CAGGTGGAGG GGATCTCATG ATTCCAAATA TTAGGGAAGC TGTGGGAAGT 
    CAAAAGGCTC CTGTTCAACA TCTTTCCAGC AAGCCTACTC ATTCTTTCAC 
    TCATGCCAGA TCACCTTCGT GGACTGAAGG TGTTAGCTCT CCAGCTGGAC 
    GCAGGATGAA AGTCAAAGAT GTTTCACAAT ATATGATTGA TGCTGCCAAA 
    GAGAATCCAC AACTAGCTCA GAAGCTTCAT GATGTGTTAC TTGAAAGTGG 
    AGTTGTAGCT CCTCGAAATT TATTTTCGGA AGTCTATTCA GAGTCAATGG 
    AGGCAACAGG TGAAATCAAA TCTGTGGCTG AATCCAATGA TGAGAAAGGG 
    AAAGATTTTG GAACAATCCA GCAAGGAAGA AACCAGAGCA ACCTTGGCCC 
    TGTGAGGTTT TTGCCTCCTC TTCCAAGACC GCAATCTAAA GCAATTACCC 
    ATGACCTACG TGAACATTCA GGATCTGGAC TCGGTCATTT GTCTGAACAT 
    TGCAATATTG ATGGTCACTC TGATTCCTCA CATTCTGAAA CATCTACTGA 
    CTATCCCAGA AATGTTCCTG TTGCCGTAGC TGCAGCGGCT GTTGTTGCGT 
    CTTCCATGGT TGTTGCTGCC GCCAAGTCAG CAAACTCGGA TTCCTCCACT 
    TTAGAACTTT CTGCTGCAGC TGCTGCTGCA GTTATGGCGA CAGCTGCAGC 
    AGTGAGCAGG CAGTTTGAAC TAGATTCACT TAGCAACGGG GATGCTGGTT 
    CTGGTGGGCT TCATGGGGTA GATTCAGGAG GAGAACGAAT ATCCGACAGA 
    TCTATTGGCA ATGAAAGTTC AAAATCTGAT GCTGCAATTG ATGATGTAGC 
    TGAATGCGAG ATTTTGTGGG AGGAAATTAC TGTGGCTGAG CGTATCGGAC 
    TGGGATCATA CGGAGAGGTA TATAGGGGAG ATTGGCATGG AACTGCAGTG 
    GCTGTCAAGA AGTTCATTGA CCAAGATATT ACTGGAGAGG CACTGGAGGA 
    ATTCAGAAGT GAGGTCCGGA TGATGAGAAG GCTCAGACAC CCTAATATTG 
    TTCTCTTCAT GGGAGCTGTA ACCCGCCCAC CAAATCTCTC AATTGTTACA 
    GAATTTCTTC CTCGAGGTAG CTTGTATAGG TTAATTCACA GGCCTAATAA 
    CCAATTAGAT GAGCGAAAGC GTCTGAGGAT GGCTCTTGAT GCTGCTCGTG 
    GAATGAATTA TTTACACAGC TGTAATCCGG TAATTGTCCA TCGTGATCTT 
    AAATCTCCAA ACCTTCTAGT TGACAAAAAT TGGGTTGTCA AGGTGTGCGA 
    TTTTGGGTTG TCTAGAATGA AAGTAAGCAC ATACCTCTCT TCAAAGTCAA 
    CAGCAGGCAC GGCTGAATGG ATGGCTCCAG AAGTGCTTAG AAACGAACCC 
    GCAGATAAGA AGTGTGATGT GTACAGCTAC GGGGTCATTC TCTGGGAACT 
    CTTTACGTTA CAGCAACCAT GGGGAAAAAT GAACCCAATG CAAGTGGTTG 
    GCGCGGTTGG TTTTCAACAT CGACGACTTG ATATCCCTGA ATTTGTGGAT 
    CCTGGAATTG CAGATATCAT CAGGAAATGT TGGCAGACGG ATCCAAGGTT 
    AAGACCAAGT TTTGGAGAGA TCATGGATTC TTTAAAGCAG CTACAGAAAC 
    CTATCCAGAG AGCAGCAGTT CCCAGTTCTT CTGCATTGAC CACTGATGAG 
    CAGGAACAAT AACATCATGC TTGATGAAGA AGATGACTAA ATGATGATGA 
    AGGTGGGGAT CATTCTTTAC ATATTAATGT TCTGTGGTGT GCTGTCCATG 
    TGTATTCACC ATGTTTTGTT TACAAATTGT AAAAAAAGAT GAATGCAAAA 
    CAAAACAAAC AAAGAAAAAA AGAAAAAAGA AGTTATTTTG TCAATGGTAA 
    AAAAATCATT GAGAAT

    Gene models with high sequence identity

    1. AT1G18160.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 99.97

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.1e-68
    ProfileScan Protein kinase, catalytic domain 43.622
    HMMSmart Serine/threonine-protein kinase domain 3.8e-61
    HMMSmart Tyrosine-protein kinase, catalytic domain 4e-62
    FPrintScan TYRKINASE 1e-11
    FPrintScan TYRKINASE 1e-11
    FPrintScan TYRKINASE 1e-11
    FPrintScan TYRKINASE 1e-11
    FPrintScan TYRKINASE 1e-11
    Gene3D no description 5.9e-21
    Gene3D no description 3.1e-57
    HMMPanther MAP3K DELTA-1 PROTEIN KINASE 3.4e-225
    HMMPanther SERINE-THREONINE PROTEIN KINASE 3.4e-225
    superfamily Protein kinase-like domain 1.3e-83

    See the detailed result >

    AT1G18160.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1); Has 123759 Blast hits to 122075 proteins in 4739 species: Archae - 100; Bacteria - 12949; Metazoa - 47184; Fungi - 11113; Plants - 33371; Viruses - 486; Other Eukaryotes - 18556 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR