F08721

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08721

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F08721

Determination of introduced cDNA(s)

  • RAFL05-13-M17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-M17 - Resource: pda02576

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-M17 - full reading 
    TGCTATCTTT GTCGCCGCCA AACCTCTCTC AGATTCTTCT TCTTCCTCGC 
    AGATCGATTT TTTTTTGAAG CTAAATCTCA AAAATGGAGA ACGACGCAGG 
    TCAGGTCACA GAGCTCTACA TTCCAAGGAA ATGCTCGGCA ACAAACAGAA 
    TGATCACATC AAAGGATCAT GCTTCAGTTC AGCTTAACAT TGGTCATCTT 
    GATGCTAATG GTCTCTACAC TGGCCAATTC ACCACTTTTG CTCTCTGCGG 
    ATTTGTCCGT GCTCAGGGAG ACGCAGACAG TGGCGTGGAC AGGCTCTGGC 
    AGAAGAAGAA GGTCGAAGCT AAACAACAGT GAGAGACAAT CTGACAATGT 
    CATAAGCTCT TGTTTGTTTT TTGAGGTTTC GATTTATTAG CTATGTGGCT 
    TTGTCATTGA ATTGAAAATG TTAGTTTCTC TTTATGCGAA TTCATGTTTT 
    CGATTTTTCT GCTTTATTAA AGATAATTAT TAGGCTTTGA GGCCAAC

    Gene models with high sequence identity

    1. AT3G53890.1 [+] show detail - Ribosomal protein S21e
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Ribosomal protein S21e 3.8e-49
    HMMPanther Ribosomal protein S21e 5.5e-45
    PatternScan Ribosomal protein S21e, conserved site 0
    HMMPfam Ribosomal protein S21e 5.2e-38
    BlastProDom Ribosomal protein S21e 3e-23

    See the detailed result >

    AT3G53890.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S21e
    Computational Description
    Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e (InterPro:IPR001931), Ribosomal protein S21e, conserved site (InterPro:IPR018279); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT5G27700.1); Has 661 Blast hits to 661 proteins in 257 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR