F08739

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08739

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08739

Determination of introduced cDNA(s)

  • RAFL09-06-N12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-N12 - Resource: pda05119

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-N12 - full reading 
    ATCACACAGA TCCACACATC AAGAAACTAT TCAAAAATGG CTTTGCTTGT 
    AGAGAAAACC TCAAGTGGCC GTGAATACAA GGTCAAGGAC ATGTCCCAAG 
    CCGACTTCGG CCGTCTCGAA ATCGAGCTAG CCGAAGTCGA AATGCCTGGA 
    CTTGTCTCTT GCGTTACCGA ATTCGGACCA TCTCAGCCAC TCAAAGGAGC 
    AAGAATCACC GGTTCTCTCC ACATGACGAT CCAAACCGCG GTTTTAATCG 
    AAACCTTAAC CGCTCTCGGC GCTGAAGTCA GATGGTGTTC TTGCAACATC 
    TTCTCCACTC AAGACCACGC CGCGGCCGCT ATTGCTCGTG ATTCCGCCGC 
    GGTGTTCGCT TGGAAAGGTG AGACTCTTCA AGAATATTGG TGGTGTACAG 
    AGAGAGCTCT TGACTGGGGT CCTGGAGGTG GTCCTGATCT CATCGTTGAT 
    GACGGTGGTG ATGCTACACT GTTGATCCAT GAAGGAGTTA AAGCTGAAGA 
    GATCTTTGCC AAGAATGGTA CGTTCCCTGA CCCGACCTCT ACTGATAATC 
    CCGAGTTTCA GATCGTCCTG TCTATTATCA AAGACGGTCT TCAAGTTGAT 
    CCCAAGAAGT ACCATAAGAT GAAGGAGAGA TTGGTTGGTG TCTCTGAGGA 
    GACTACTACT GGTGTTAAGA GGCTTTATCA GATGCAGGAG ACTGGAGCTC 
    TCTTGTTCCC TGCCATTAAC GTCAATGACT CTGTCACCAA GAGCAAGTTT 
    GACAACTTGT ACGGATGCCG ACACTCGCTT CCCGATGGTC TCATGAGGGC 
    TACTGATGTT ATGATTGCTG GAAAGGTTGC TGTTATCTGT GGTTATGGTG 
    ATGTAGGAAA AGGTTGTGCT GCAGCAATGA AAACCGCGGG TGCTCGTGTC 
    ATAGTGACTG AGATTGATCC AATCTGTGCT CTTCAGGCTC TTATGGAAGG 
    TCTTCAAGTT CTGACCCTTG AGGATGTTGT CTCAGAAGCT GATATCTTCT 
    GTACCACTAC TGGTAACAAA GATATTATTA TGGTTGATCA CATGAGGAAG 
    ATGAAGAACA ATGCCATTGT CTGTAACATT GGTCATTTTG ACAATGAAAT 
    CGACATGCTT GGACTTGAGA CCTACCCTGG TGTGAAACGT ATTACCATCA 
    AGCCACAGAC CGATAGGTGG GTGTTTCCTG ATACCAACTC TGGCATCATT 
    GTTCTAGCTG AAGGTCGTTT GATGAACTTG GGATGCGCCA CTGGACACCC 
    GAGTTTCGTG ATGTCGTGCT CATTCACCAA CCAGGTGATT GCACAGCTTG 
    AGCTCTGGAA CGAGAAGTCA AGCGGGAAGT ATGAGAAGAA GGTCTATGTT 
    TTGCCTAAAC ACTTGGATGA GAAGGTAGCT GCACTTCACT TAGGCAAGCT 
    TGGTGCAAGA CTCACCAAGC TTACCAAGGA CCAATCTGAC TATGTCAGCA 
    TACCCGTTGA AGGTCCTTAC AAGCCTGTTC ACTACAGGTA CTGAGAGGAT 
    AAAAGAGCCA AGCTTTGGTT CTTCGTTTGG TTTTCTGATT AAGCCGTTTA 
    TTGGCAATTG TTTGAGTCGG ATTGGGTCTG GTTTGGTCGG AGAAATATGA 
    GATATTGGTC TTCTGATGCG TGTGACCAAA TATTGGTATG AATAAGGGGT 
    TGTTTTTGAT TTATGAGAGG CTGTTTTTTT GTTTTCTTCT TCTTCTATTT 
    TATATATCTT CAACATAAAT TAGCTTATGC TTTACACT

    Gene models with high sequence identity

    1. AT3G23810.1 [+] show detail - S-adenosyl-l-homocysteine (SAH) hydrolase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam S-adenosyl-L-homocysteine hydrolase 1.9e-141
    HMMPfam S-adenosyl-L-homocysteine hydrolase, NAD binding 3.7e-83
    HMMTigr S-adenosyl-L-homocysteine hydrolase 4.6e-236
    PatternScan S-adenosyl-L-homocysteine hydrolase, conserved site 0
    PatternScan S-adenosyl-L-homocysteine hydrolase, conserved site 0
    HMMPIR S-adenosyl-L-homocysteine hydrolase 2e-252
    Gene3D no description 1.5e-132
    superfamily Formate/glycerate dehydrogenase catalytic dom 5.6e-113
    superfamily NAD(P)-binding domain 4.2e-46
    HMMPanther S-adenosyl-L-homocysteine hydrolase 0

    See the detailed result >

    AT3G23810.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-l-homocysteine (SAH) hydrolase 2
    Computational Description
    S-adenosyl-l-homocysteine (SAH) hydrolase 2 (SAHH2); FUNCTIONS IN: adenosylhomocysteinase activity; INVOLVED IN: one-carbon metabolic process; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), S-adenosyl-L-homocysteine hydrolase, conserved site (InterPro:IPR020082), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-homocysteine hydrolase (TAIR:AT4G13940.1); Has 7939 Blast hits to 7933 proteins in 1466 species: Archae - 229; Bacteria - 2315; Metazoa - 640; Fungi - 145; Plants - 247; Viruses - 0; Other Eukaryotes - 4363 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR