F08813

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08813

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F08813

Determination of introduced cDNA(s)

  • RAFL06-11-B12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-B12 - Resource: pdz87578

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-11-B12 - 5 prime EST 
    GAGATCTGGT TATTTTCTTC CTTCGTGTGG AACAGCCATG GCTATGGAGT 
    TTCTGAGGAG CAGTAGAAGA ATATTGGAAT CTTCTGGATG CGCGATCGCT 
    TTGATTTTTC TGCTCTTCAT CCATGGAGCT CACTCATTCT ATCTCCCAGG 
    TGTTGCTCCT CAGGATTTCG AGAAGGGTGA TGAGCTGAAG GTGAAAGTGA 
    ATAAATTAAC TTCCATAAAG ACTCAGCTTC CATACTCGTA TTACTCCCTT 
    CCTTTTTGTC GCCCTAGCAA GATTGTGGAC AGTACTGAGA ATCTTGGAGA 
    AGTGCTTCGG GGTGACCGGA TTGAGAATGC CCCATACTCG TTTAAAATGC 
    GGGAGGCACA AATGTGCAAT ATTCTCGGCC GGGTCACTCT TGATGCCAAG 
    ACAGCTAAAG CGTTTAAAGA AAAGATCGAT GATGAGTACC GGGTCAACAT 
    GATCCTCGAC AACCTTCCTC TGGTTGTTCC AATTGAAAGA GTCGACCAGG 
    GTTCTCCCTC TGTTGTTTAT CAGCTTGGTT ATCATGTTGG TCTTAAAGGC 
    CAGTACGAGG GGAGCAAAGA GCAGAAGTTC TTTATGCACA ATCACTTGGC 
    ATTTACAGTC CGCTNTCACA GAGATATCCA AACTGATGCT GCAAGAATCG 
    TGGGATTTGA GGGTAAACCT T

    Gene models with high sequence identity

    1. AT5G10840.1 [+] show detail - Endomembrane protein 70 protein family
      E-value: 0; Score: 99.70

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-11-B12 - 3 prime EST 
    ACTTATAAAA ATTGGTTATA TTGCAAAAAT TCTCAGAAAG TGTTGTTATT 
    TGACAAATCA AACAAAATAC ACTCTATTAC ATATATTAAA ATCTCTTTTG 
    GTATGCAACA AAATAGAACC TAAAATGCAA CAAAACCGAT TTTAAAAAGA 
    AAAATAAGAT AAACTATGAT CACCTTTTCT TCTTTGTTTC CTTAATCGCC 
    ATGATGATCA TCATATCCTC TAATCGATCT TAACAGAGGA ATAGATGAGC 
    CTTGTGAACC AGAGACAAGC ATAGAACCCT ATTGTTCCTG TGAGCACAAA 
    AAATGCGTAG GAGGCGATGA GCATGTACCC AAAGTAAAGC ATCGCAGAGA 
    CCAGTTTGGT GATCTGAAGC TTTGTGAAGA AGTAGAACGT GGCATAGAGG 
    AAGAGGTAGA GAGCTGATGA GCCTGATGTG AGGTATGATC TCCACCACCA 
    AAGGTAGTCC TCACTGCAAA GCTGGAAGTA GCAGAGTACT ACGGTTATCT 
    CGGCGCA

    Gene models with high sequence identity

    1. AT5G10840.1 [+] show detail - Endomembrane protein 70 protein family
      E-value: 0; Score: 100.00

    AT5G10840.1

    Model type
    Protein coding
    Short Description
    Endomembrane protein 70 protein family
    Computational Description
    Endomembrane protein 70 protein family; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G25100.1); Has 1652 Blast hits to 1622 proteins in 358 species: Archae - 0; Bacteria - 81; Metazoa - 616; Fungi - 232; Plants - 453; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR