F08815

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08815

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08815

Determination of introduced cDNA(s)

  • RAFL06-15-D17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-D17 - Resource: pda03201

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-D17 - full reading
    CATTATTACA CCACCGTTGG CCTCCGACGA CGGCTCAAGC CTATCTTCGT 
    CGCCGGCTTC TCCGATGGTT ACCAATCGCG TAGACGTCTT CTGGCACGAA
    GGAATGCTCC GACACGACGC CGTAGAAGGC GTCTTCGACA CTGGATACGA
    CCCTGGATTC CTCGACGTAT TGGAGAAGCA CCCGGAGAAC GCCGATCGCG
    TCAGGAACAT GCTTTCGATT CTCCGACGCG GTCCCATCGC TCCTCATGTC
    AATTGGTTTA CCGGTCTTCC AGCAATCGTT TCGGAGCTTC TAATGTTTCA
    CACTTCAGAG TACATTGAGA AGCTAGTGGA GGCAGATAAA TCAGGAGAAA
    GGTGTGAAAT TGCCGCAGGT ACTTTCATGA GCCCAGGCTC GTGGGAAGCT
    GCTCTTCTTG CAGCTGGAAC AACTCTTTCA GCAATGCAAC ATATTCTTGA
    TTGCCATGGG AAAATTGCAT ATGCTCTGGT ACGCCCACCA GGTCACCACT
    CACAGCCTAC TCAGGCTGAT GGGTATTGCT TCCTCAACAA CGCTGCTCTT
    GCTGTCAAGC TGGCATTGAA TTCGGGTTCT TGTTCCCGAG TTGCGGTTAT
    TGACATCGAT GTACATTATG GAAATGGCAC AGCTGAAGGG TTTTATACAT
    CTGATAAGGT TCTTACGGTG TCACTCCATA TGAACCATGG ATCATGGGGA
    TCGTCCCACC CGCAGAAAGG GTCGATTGAT GAACTTGGTG AAGACGTGGG
    ATTGGGTTAC AATCTGAATG TCCCTTTACC GAATGGCACG GGTGACCGGG
    GATATGAATA TGCCATGAAT GAGCTGGTGG TTCCTGCAGT TAGAAGGTTT
    GGACCCGATA TGGTTGTTCT CGTTGTTGGT CAAGACTCTA GCGCTTTTGA
    TCCAAACGGG AGACAAAGCC TGACAATGAA TGGATACAGA AGGATTGGGC
    AGATAATGAG GGGAGTTGCA GAGGAGCACA GCCATGGAAG GTTGCTTATG
    GTGCAAGAAG GCGGGTATCA TGTAACATAT GCAGCTTACT GCCTCCACGC
    CATGCTCGAA GGGGTGCTGA AGATTCCAGA ACCGCATCTA TCTGATCCGA
    TCGCTTATTA TCCCGAAGAA GAAGCTAATG CTGTTGCTGC TGTGGAGTCA
    ATCAAAACAT ATCACACCGA ATTTGTTCCA TTTCTCAGAG GAACTTGAAA
    ATGGGACGTA TGAATGAGTT TATGTTATTC CTCGTTGTCT TGTGACCTTT
    TGGAACACAG ATCCAAATCA ATCAGGTCAA ACCGTATATA TCAAAATACT
    TGTTGATCAA ACTATCTTTT GTATGAAAAC TTATTCACAC G

    Gene models with high sequence identity

    1. AT1G08460.1 [+] show detail - histone deacetylase 8
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Histone deacetylase superfamily 6.9e-85
    HMMPanther HISTONE DEACETYLASE-RELATED 1.5e-237
    HMMPanther Histone deacetylase superfamily 1.5e-237
    FPrintScan Histone deacetylase superfamily 0.000000000000039
    FPrintScan Histone deacetylase superfamily 0.000000000000039
    FPrintScan Histone deacetylase superfamily 0.000000000000039
    superfamily Arginase/deacetylase 3.7e-92
    HMMPfam Histone deacetylase superfamily 3.2e-78

    See the detailed result >

    AT1G08460.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 8
    Computational Description
    histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR