F08820

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08820

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08820

Determination of introduced cDNA(s)

  • RAFL09-22-A22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-A22 - Resource: pda05615

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-A22 - full reading 
    AAACCACAGA GAGAAAGCCT CCGTCTCCCT TATCAAAGAA GAAGAAGACG 
    TGTATAACAA AACACTAGAC ACATTGTGAA GATAGAAAAA AATGGAGAGA 
    GCAGCAATTC TCCCGAGTGT TAATCAAAAT TACCTACTTT GTCCTTCACG 
    CGCCTTCTCC ACGCGCCTCC ACTCCTCTAC TCGTAACTTA TCGCCGCCGT 
    CATTTGCCTC CATCAAGCTT CAGCATTCTT CTTCCTCTGT TTCTTCTAAT 
    GGTGGAATCT CTCTTACTCG ATGCAACGCT GTTTCGTCCA ATTCTTCCAG 
    TACGTTGGTA ACTGAATTAG CCGACATAGA TTGGGATACC GTTGGATTTG 
    GGCTTAAGCC AGCTGATTAT ATGTATGTGA TGAAATGTAA CATTGATGGA 
    GAGTTCTCAA AAGGTGAGTT GCAACGTTTT GGGAATATTG AAATTAGCCC 
    ATCTGCTGGT GTACTCAACT ATGGACAGGG ATTGTTTGAA GGGCTAAAAG 
    CTTACAGAAA GAAAGATGGT AATAACATCC TCCTCTTTCG TCCTGAGGAG 
    AATGCAAAGC GTATGAGAAA TGGTGCTGAG AGGATGTGTA TGCCTGCTCC 
    AACCGTTGAG CAGTTTGTAG AAGCTGTGAC AGAAACTGTA CTAGCAAACA 
    AACGTTGGGT TCCACCACCA GGTAAAGGTT CCTTATATGT TAGACCATTG 
    CTAATGGGAA CAGGAGCTGT TCTTGGTCTT GCGCCTGCAC CAGAATATAC 
    TTTCATTATC TATGTTTCGC CTGTTGGGAA CTACTTCAAG GAAGGTGTGG 
    CACCTATCAA TTTGATTGTG GAGAATGAAT TTCACCGTGC AACTCCTGGT 
    GGTACCGGAG GTGTTAAAAC CATAGGCAAT TATGCTGCAG TACTGAAGGC 
    ACAGTCAATT GCGAAAGCTA AAGGATATTC CGATGTTTTG TACCTTGATT 
    GCATTTACAA AAGATATCTT GAGGAGGTCT CGTCTTGCAA TATTTTCATC 
    GTGAAGGACA ATGTGATATC TACTCCTGAA ATAAAAGGAA CCATTTTACC 
    CGGTATTACT CGAAAAAGTA TGATAGACGT GGCTCGAACA CAAGGGTTTC 
    AGGTGGAGGA ACGGAATGTG ACAGTGGATG AATTGTTAGA AGCAGACGAG 
    GTTTTCTGCA CAGGAACCGC CGTGGTTGTC TCTCCTGTTG GAAGCGTCAC 
    TTACAAAGGC AAAAGAGTGT CTTACGGAGA AGGTACCTTC GGAACTGTGT 
    CGAAGCAACT CTACACCGTT CTGACAAGCT TGCAGATGGG TCTGATTGAA 
    GACAACATGA AATGGACTGT GAATCTTAGT TAAGCCAGGC GAATGCATTG 
    CATCAATTCG GCTGCTTGGT TTTGCTTTCT TTTCTTTGGT CTGTGGTTCT 
    GATTCGTGAA ACTATGAGTT GGATTGTTTA GAATCTGGTT GATCTAGAAC 
    TTAGCTGGTT CAAGATCATT AGATGTTGTT GCATCATACC AATAATATTA 
    TCTTTAGATC T

    Gene models with high sequence identity

    1. AT3G49680.1 [+] show detail - branched-chain aminotransferase 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.2e-57
    Gene3D no description 2.5e-34
    HMMPIR Branched-chain amino acid aminotransferase II 6.8e-168
    HMMPfam Aminotransferase, class IV 6.2e-32
    HMMPanther Branched-chain amino acid aminotransferase II 5.4e-176
    HMMPanther Aminotransferase, class IV 5.4e-176
    HMMTigr Branched-chain amino acid aminotransferase II 4.1e-127
    superfamily Aminotransferase, class IV 6.7e-113
    PatternScan Aminotransferase, class IV, conserved site 0

    See the detailed result >

    AT3G49680.1

    Model type
    Protein coding
    Short Description
    branched-chain aminotransferase 3
    Curator Summary
    Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.
    Computational Description
    branched-chain aminotransferase 3 (BCAT3); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 12479 Blast hits to 12479 proteins in 2523 species: Archae - 154; Bacteria - 7638; Metazoa - 266; Fungi - 416; Plants - 252; Viruses - 0; Other Eukaryotes - 3753 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR