F08828

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08828

Determination of introduced cDNA(s)

  • RAFL05-21-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-G15 - Resource: pda02816

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-G15 - full reading 
    ACTTCTCATA AAAAAGGTCA TTTCAAAAAA AAATCAGAAA CCGTCAAAAA 
    GCCACCGTTG ATATTTCTTC CTTGTTGCTT CTTCAATGGC GTCGTTCGAC 
    GAAGCACCTC CCGGAAACCC CAAAGCCGGT GAAAAGATCT TCAGAACCAA 
    GTGCGCTCAG TGTCACACCG TCGAGAAAGG TGCCGGTCAC AAACAAGGAC 
    CGAATTTGAA TGGATTGTTT GGAAGACAAT CTGGAACAAC TCCAGGATAT 
    TCTTACTCTG CTGCTAACAA AAGCATGGCT GTGAATTGGG AGGAGAAGAC 
    TCTTTACGAT TACTTGTTGA ATCCTAAGAA GTACATCCCT GGAACAAAAA 
    TGGTGTTTCC TGGACTGAAA AAACCGCAAG ATCGTGCCGA TCTCATCGCT 
    TATTTGAAGG AAGGTACTGC TTAGACAGGC TCGTCCAGAT ATATGAAGCT 
    GGCATTTTTT TTTCTCACAG CTAAATAAAA TCAGACCAAA AATATTATGG 
    TCATGAACTG CTTTTTGTAT GGTCTTTTAT TCTTTCTTTC TTTTTACGTT 
    GTTGAAGAGG CTAGTTGCCT CTTATAAAGT GGAATATTCG TTATTGATGT 
    GAAGAGCTAA GAACCAATTT CCACCACGAT AGTCATGAGA TTTTCCTTAA 
    AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT4G10040.1 [+] show detail - cytochrome c-2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome c domain 7.8e-34
    HMMPfam Cytochrome c, class I 0.00000000000091
    Gene3D Cytochrome c domain 9.1e-38
    ProfileScan Cytochrome c domain 15.638
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    HMMPanther Cytochrome c, class IA/ IB 2e-72

    See the detailed result >

    AT4G10040.1

    Model type
    Protein coding
    Short Description
    cytochrome c-2
    Curator Summary
    Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers.
    Computational Description
    cytochrome c-2 (CYTC-2); CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTOCHROME C-1 (TAIR:AT1G22840.1); Has 4050 Blast hits to 4028 proteins in 748 species: Archae - 0; Bacteria - 1493; Metazoa - 643; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR