F08828

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08828

Determination of introduced cDNA(s)

  • RAFL05-21-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-G15 - Resource: pda02816

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-G15 - full reading
    ACTTCTCATA AAAAAGGTCA TTTCAAAAAA AAATCAGAAA CCGTCAAAAA 
    GCCACCGTTG ATATTTCTTC CTTGTTGCTT CTTCAATGGC GTCGTTCGAC
    GAAGCACCTC CCGGAAACCC CAAAGCCGGT GAAAAGATCT TCAGAACCAA
    GTGCGCTCAG TGTCACACCG TCGAGAAAGG TGCCGGTCAC AAACAAGGAC
    CGAATTTGAA TGGATTGTTT GGAAGACAAT CTGGAACAAC TCCAGGATAT
    TCTTACTCTG CTGCTAACAA AAGCATGGCT GTGAATTGGG AGGAGAAGAC
    TCTTTACGAT TACTTGTTGA ATCCTAAGAA GTACATCCCT GGAACAAAAA
    TGGTGTTTCC TGGACTGAAA AAACCGCAAG ATCGTGCCGA TCTCATCGCT
    TATTTGAAGG AAGGTACTGC TTAGACAGGC TCGTCCAGAT ATATGAAGCT
    GGCATTTTTT TTTCTCACAG CTAAATAAAA TCAGACCAAA AATATTATGG
    TCATGAACTG CTTTTTGTAT GGTCTTTTAT TCTTTCTTTC TTTTTACGTT
    GTTGAAGAGG CTAGTTGCCT CTTATAAAGT GGAATATTCG TTATTGATGT
    GAAGAGCTAA GAACCAATTT CCACCACGAT AGTCATGAGA TTTTCCTTAA
    AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT4G10040.1 [+] show detail - cytochrome c-2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome c domain 7.8e-34
    HMMPfam Cytochrome c, class I 9.1e-13
    Gene3D Cytochrome c domain 9.1e-38
    ProfileScan Cytochrome c domain 15.638
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    FPrintScan Cytochrome c, class IA/ IB 2.9e-36
    HMMPanther Cytochrome c, class IA/ IB 2e-72

    See the detailed result >

    AT4G10040.1

    Model type
    Protein coding
    Short Description
    cytochrome c-2
    Curator Summary
    Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers.
    Computational Description
    cytochrome c-2 (CYTC-2); CONTAINS InterPro DOMAIN/s: Cytochrome c, class IA/ IB (InterPro:IPR002327), Cytochrome c, class I (InterPro:IPR003088), Cytochrome c domain (InterPro:IPR009056); BEST Arabidopsis thaliana protein match is: CYTOCHROME C-1 (TAIR:AT1G22840.1); Has 4050 Blast hits to 4028 proteins in 748 species: Archae - 0; Bacteria - 1493; Metazoa - 643; Fungi - 252; Plants - 160; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR