F08910

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08910

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F08910

Determination of introduced cDNA(s)

  • RAFL06-11-A17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-A17 - Resource: pda07535

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-11-A17 - full reading 
    ACTCACTCTC ACTCACAAAA AAAAATGTCT ACCATTTCAA AACCTCTCTT 
    CTTAAAACTT CTCTATATCT TCTTCTTCTT CTGCTACTCA GTTTCTCTCT 
    CATGGTCTTC GTCTCTTTCT CTCCACTTTC CTCTCACATC TCTTCGTCTC 
    ACTCCAACCA CAAACTCCTC CTCCTTCAAA ACCTCCCTCC TTTCTCGCCG 
    GAACCCATCT CCGCCGTCGT CTCCGTACAC TTTCCGATCA AACATCAAAT 
    ACTCAATGGC TCTAATCCTC TCTCTTCCCA TAGGAACACC ATCTCAGTCA 
    CAAGAGCTAG TTCTTGACAC CGGAAGCCAA CTCTCATGGA TCCAATGCCA 
    TCCCAAGAAA ATCAAGAAAC CACTTCCTCC TCCAACGACG TCGTTTGATC 
    CTTCTTTATC TTCATCGTTC TCCGACCTAC CTTGCTCTCA TCCTCTTTGT 
    AAACCTAGAA TTCCCGATTT TACCCTTCCC ACGTCTTGTG ACTCGAACCG 
    TCTCTGTCAC TACTCTTACT TCTACGCTGA TGGAACCTTC GCCGAGGGCA 
    ATCTCGTTAA AGAAAAATTC ACTTTCTCAA ATTCCCAAAC TACCCCTCCT 
    TTGATTCTTG GTTGTGCTAA AGAGTCAACT GACGAGAAGG GTATTTTGGG 
    AATGAATCTT GGTCGTCTTT CTTTTATCTC ACAAGCAAAG ATTTCTAAAT 
    TCTCTTACTG TATCCCAACC CGGTCAAACC GTCCCGGTTT AGCCTCAACC 
    GGCTCGTTTT ACCTCGGAGA TAACCCGAAT TCTCGTGGTT TCAAATACGT 
    TTCTCTTTTG ACTTTTCCTC AAAGTCAACG CATGCCGAAT CTAGACCCTT 
    TAGCTTACAC TGTACCATTA CAAGGTATCA GAATCGGACA AAAGAGACTC 
    AACATACCCG GTTCTGTTTT TAGACCCGAT GCAGGTGGGT CGGGTCAAAC 
    CATGGTTGAT TCGGGTTCTG AATTTACTCA CTTAGTCGAC GTGGCGTATG 
    ATAAAGTCAA AGAAGAAATA GTGAGGCTTG TGGGATCAAG ATTAAAGAAA 
    GGTTACGTGT ACGGTTCGAC AGCTGACATG TGTTTTGATG GTAACCATTC 
    GATGGAGATC GGACGGTTGA TAGGCGATCT TGTGTTTGAG TTTGGGAGAG 
    GTGTTGAGAT ACTCGTTGAG AAACAAAGCC TTTTGGTTAA CGTAGGAGGT 
    GGGATTCACT GTGTTGGAAT CGGACGGTCA AGCATGCTTG GTGCAGCTAG 
    TAATATAATC GGGAACGTTC ATCAGCAAAA TCTTTGGGTT GAGTTTGATG 
    TGACCAATAG GAGAGTTGGT TTTAGTAAAG CTGAGTGTAG ATTATTGCCG 
    TGAGTAGGTG AATATTCTTC TACGGTCGTG CGTATTAGTT TTGAGTTGTA 
    TCTCATTATG ATGATCGTTG GATGTTTGAT CGAATGGTGT ATAGGAAATC 
    TGGGATTTTT GTGGGTCCCG TAGAAGGACA ACTGTCTGAA GCAAACTTCT 
    CAATCTTTAT TAGGCTCTGG AACTATGTAT AAATGTTTGT ACTATGATAA 
    TTAAAAGCTT GTATATTAAA TGGTTAATAT AACTTGTTAT CAG

    Gene models with high sequence identity

    1. AT5G37540.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Peptidase aspartic 1.1e-76
    PatternScan Peptidase aspartic, active site 0
    Gene3D Peptidase aspartic, catalytic 3.3e-18
    Gene3D Peptidase aspartic, catalytic 3.7e-25
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 2.8e-90
    HMMPanther Peptidase A1 2.8e-90
    FPrintScan Peptidase A1 0.00007
    FPrintScan Peptidase A1 0.00007
    FPrintScan Peptidase A1 0.00007
    HMMPfam Peptidase A1 0.000018
    HMMPfam Peptidase A1 0.00026

    See the detailed result >

    AT5G37540.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G66180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR