F08916

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) desaturated green (PATO:0001272) (Cauline leaf::Color::pale) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	increased thickness (PATO:0000591) (Silique::Shape::thick)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08916

Determination of introduced cDNA(s)

RAFL07-08-H05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-08-H05 - Resource: pda01451

full reading [+] show sequence

ACGGTTCCTC GTTCGTCCTC TCCCGTCGTC TCTCCGCACT AAATTGATGG 
GCACATCATC TGGGTCCAAT CTTCCTCACC AGATGCTACC TCCACGTCAG 
CAACTACAAA CATCTCTTTC GCTTGTATCT TCAGATCCCC ACTTGTCACG 
GTCTAATTCT GGCATTGTGC GTGAATCACC AGCTGAAAGT GCTAGCTCTC 
AAGAAACTTG GCCAACCTCA AAATCTATTA TGGGAAGGAA GACAGATAGC 
GGAAAGACAG GGCCTGACTC TCATGATCAA CATGTGATCC GCCATGTTTC 
CATTGCTGAT AAGGTATCGC TACGGGACAT AGCTAGAGAG AGACTTGACA 
TAGTCGCTGA GAGAATGCAT CGATTACCAG AAGAATATCT CGAGGAGTTA 
AAGAATGGTC TTAAGGCTAT CCTTGAAGGA AATGGTGCGC AGCCTATAGA 
TGAGTTTATG TTTCTGCAGA AGTTTGTCCA GACGAGATCT GATTTAACTT 
CAAAGACACT TGTCAGGGCT CACCGAGTGC AGCTTGAAGT TCTTGTGGTT 
ATAAACACTG GTATCCAAGC ATTCTTGCAC CCAAACATCA ATCTCTCTCA 
GTCATCACTC ATCGAGATCT TTGTGTACAA GAGATGCAGA AACATAGCTT 
GCCAAAACGA ACTCCCGGCT GATGGTTGTC CCTGTGAGAT ATGCGCTAAT 
AGGAAAGGCT TCTGCAACCT GTGCATGTGT GTGATATGTA ACAAGTTTGA 
CTTTGCAGTC AACACATGCC GCTGGATTGG CTGCGACGTG TGTTCTCATT 
GGACTCATAC GGATTGTGCT ATTAGGGATG GGGAGATTTC GATGGGAGTT 
TCTCCCAAGA GCGTATCTGG GATGGGAGAA ATGCTGTTCA AGTGTCGAGC 
GTGCAACCAT ACTTCTGAAT TGCTGGGGTG GGTGAAAGAT GTGTTTCAGC 
ACTGTGCACC AAACTGGGAT AGGGAATCTT TAATGAAGGA ACTTGACTTC 
GTTAGTAGGA TTTTCCGTGG AAGCGAAGAT ACAAGAGGCC GGAAACTCTT 
CTGGAAGTGT GAGGAGCTTA TGGAGAAGAT TAAAGGTGGA CTGGCTGAAG 
CAACAGCGGC CAAGTTGATA CTCATGTTTT TCCAAGAAAT TGAATTGGAC 
TCTCCAAAGA GCCTTGAAAG CGGAGAAGGT GGGGGTACGA TAGCACCTCA 
AGATGCATGC AACCGAATTG CTGAAGTTGT AAAGGAAACA CTGAGGAAAA 
TGGAGATAGT GGGTGAGGAA AAGACGAGGA TGTACAAGAA AGCGCGAATG 
GGGCTTGAGG AATGCGAGAG AGAGGTAGAA GAGAAAGCAA AGCAAGTGGC 
GGAACTGCAG ATGGAGAGGC AGAAGAAGAA ACAACAGATA GAAGAGGTGG 
AGAGGATAGT GAGGCTGAAG CAAGCAGAGG CAGAGATGTT TCAGTTAAAA 
GCAAACGAGG CAAAAGTGGA AGCAGAGAGA TTGGAAAGGA TTGTGAAAGC 
GAAAAAGGAG AAAACAGAAG AGGAATACGC AAGTAACTAT TTGAAACTGA 
GGCTGAGCGA GGCGGAGGCA GAGAAAGAGT ATCTGTTTGA AAAGATAAAA 
GAGCAGGAAA GTGGTGGGAA TGGTGGTGAA GCGTCACAAG CAGTGATGTA 
CTCAAAGATC AGAGAAATGC TGCATGGATA CAATGCATCG TCGCCAAGGG 
TAGATCCAAG ATCAAACCAG CGAAATCCTT TCAGATCCAA TCCTTAGATG 
TTTGTATTGT CTCTCTTTGT TTGTATTAAA AAAAAAATCC GAATCAATTA 
AGGTTGGATT TGTGTGTGAA GTATTGTGGT CTTTGTATTC AAATTTTGCA 
CATGATCGTC TATGTTGGGC CATAATGTTA TGCAAGCTTT GACAAAAAAA 
AAAAAAAAA

Gene models with high sequence identity

AT3G07780.1 [+] show detail - Protein of unknown function (DUF1423)
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF1423, plant	1e-206
FPrintScan	Protein of unknown function DUF1423, plant	5.5e-88
FPrintScan	Protein of unknown function DUF1423, plant	5.5e-88
FPrintScan	Protein of unknown function DUF1423, plant	5.5e-88
FPrintScan	Protein of unknown function DUF1423, plant	5.5e-88
FPrintScan	Protein of unknown function DUF1423, plant	5.5e-88
FPrintScan	Protein of unknown function DUF1423, plant	5.5e-88
FPrintScan	Protein of unknown function DUF1423, plant	5.5e-88
FPrintScan	Protein of unknown function DUF1423, plant	5.5e-88
HMMPanther	MLP3.23 PROTEIN	8.4e-277
HMMPanther	VERNALIZATION-INSENSITIVE PROTEIN 3	8.4e-277
Coil	coiled-coil	0
HMMPIR	Protein of unknown function DUF1423, plant	0
HMMSmart	Zinc finger, PHD-type	0.00013

See the detailed result >

AT3G07780.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1423)
Curator Summary: Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.
Computational Description: OBERON1 (OBE1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT5G48160.2); Has 8996 Blast hits to 6188 proteins in 768 species: Archae - 88; Bacteria - 1159; Metazoa - 3345; Fungi - 619; Plants - 512; Viruses - 79; Other Eukaryotes - 3194 (source: NCBI BLink).
Link: InterPro Scan - TAIR