F08929

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08929

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08929

Determination of introduced cDNA(s)

  • RAFL16-21-I15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-21-I15 - Resource: pda19509

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-21-I15 - full reading 
    AATTTCTTCT TCTCTCTCTC TTCTTCCTTC ACCAAAGCAG CTGCTTTTGC 
    CAAACCCCTG TGACTTTGAG AGAGAGAGAG AGAGAGAAGA GAGATCATCA 
    TCCATGGGAA TACCTTATTT TCTCCAAGTT TACCTTAATC AGAACTCATT 
    TTCTTCTTCT TCTCCATCTC CGAAATCGAT CGTCGATTTT GTCTTCTCGC 
    CGCTATTCTA AGCTTCTAAA GTTCACTTTT TTTTTCTCCT GAATCATTTG 
    TTTGTTCTGT ACAAACCTTA GAGGAATCGG TATAAATCTA TTCTAAGCTG 
    AAAATTTTGA GATGCCCATT TCGTCTTCGT CATGCTTAAG CTGATTACCG 
    CAGTCAAAGT CGTATCTTGG TGTTTGGCGG CGCTCTCGAG CTTAGATCAG 
    TGTTTCCATG GCTTAGTCTC TGATCTTTCT ACAGATCTTC ATAACTCTCC 
    GCTCACTGGG TTCTTATCTG CTTTCTCTAA TCCTAACTTC TTCTTCGTCC 
    GGATTATTTG ATTTCTTAAA AGCTGGAAAT TTACAGAGAC TTCGACGATT 
    TAGCTGTGTT GTAGGAAGCT GGGAAAGATG TTGATCAGAG TTATGCATTA 
    GAGTGATTTG CTTTAGGATT TCCACGGCAC AGGGGATTGA TTTTAGGGGT 
    ATTGTTTGGT CATTAGATTA AAGGTTTTTA AGGGTTTCCA CTGTCATTGG 
    TATATAGAGA TTGTTGCGTT GGGGTTGCTT TAGAACTTGA TTTAGGACAA 
    AAGACTTTGA CTTTGAACTG GCAGTAGTTA GTGTTTTTAT CTGATGTAAA 
    GGAGGGTTTG GAGCGTTTGA TGCTTGCCGA ATCAATTTTA TTTTGAAAAA 
    TGTGTGAGAA TGATCATCAT TTTGTCGAGT GGAAGGAGCA TTTTGTCTCC 
    CAAGAGCGAG GGAACCGTGT TGTTCATTAC TTCCTCAAGG ATTCTGCCGG 
    TGAATCTATC CTAGCTGTCA TTGGTACTGA GAGAAGTGTT AGGCACATGT 
    TCTATGTTGT CTCTGAGGAG TTTGTGCGCA TTCATGGTCC TGAGAATTCA 
    ATTCATTCTG GCTTCAAATG GAGGTCGAGA AGGGAAGTTG TGGATTGGCT 
    CACTTCAATG CTGTCTAAGC AGAGTACACA AGGAAACTGG TCGAAGTCAC 
    CAAAATGTGA GTCAGGGGAA TCTAATGGAT CTCCCGAATT TCCAAGCAAT 
    GGATTTACTG CTCAGCGAGC TCAAGCAAGT GAAGAGGTCC GTCTTCCCAT 
    AAACTTGATT ATTCACAGTT GGGAGATTAT GTGGTCAGGA GCTCCTTGGA 
    TGTGTGGTAA ACAGCTCAAA CATTACCCAT CATTTTGCAG AAATGGGACA 
    ACAATAGGGG TTCAATCTTT TGTCTTTGTC TTGAGCAAAG GGGAGGATCG 
    GTACGTTGCA TATCTGGAAG ATATGTATGA GGATAAGCGT GGCCTAAAAA 
    AGGTCAAAGT GAGGTGGTTT CACTACACAA AAGAAGTGAA GGGTGCAGTT 
    GCTCTCAAGA ACCCAAACCC AAAAGAGGTT TTTATCACCC CTCATTCACA 
    GGTCATCAGT GCAGAATGTG TTGATGGTCC TGCCACTGTC TTGACCCGTG 
    AGCATTATGA GGAGTGTGTG GCTTCCTTTC CGAATTCTTT ATTGGCAAGG 
    GTACACATGT GCTATCGGCA ACTCAGGAAC AGCAAAGTTA AACCTTTTGA 
    TTTGAGTAAA TTGCGTGGAT ATTTGGACCA ACCGATTATG TCTTGCTTAA 
    GTTCTATGGA GGCTGGTCCT GTAGACTGTG CGATGAATAT AGAGGAAGAT 
    GAAGAATGGA GTGAGGGTGA GAATGTAATG GTTGGTGCTG AGAGAAGCAT 
    GAAAAAACGA GCAAGAATTA TGTCTGATCA TCTGTTAACA ACTTACGAAT 
    CTTCATGTAA GAGACTAAAA CTTAATGCCT CGGGCAAAAG ATTTCCTTCA 
    CCAACCAATG TTCAGAAACA TCCTTGTTAC AACGGAGTGG TTAAGACTGA 
    TGCAAAAATA GAGTTTCTGT GTCAAGATAG CGGTATTAGA GGCTGTTGGT 
    TTAGATGCAC TGTCCTGGAC GTATCAAGGA AACAGGTAAA ACTCCAGTAT 
    GATGATATAG AGGACGAGGA TGGATATGGA AACCTTGAGG AATGGGTGCC 
    GGCTTTTAAA TCTGCTATGC CTGACAAGCT TGGTATAAGG TTGTCCAACC 
    GCCCAACAAT CCGACCTGCT CCTCGAGATG TTAAAACAGC ATACTTTGAT 
    CTTACAATTG GTGAAGCTGT TGATACATGG TGGAATGATG GTTGGTGGGA 
    AGGTGTTGTA ATTGCCACTG GCAAACCGGA TACTGAGGAC TTGAAAATAT 
    ATATCGCTGG GGAGAACTTA TGCTTAACAG TGCTCAGAAA GGATATTCGG 
    ATTTCCAGAG ACTGGGTGGG AGATAGCTGG GTTGATATCG ATCCTAAACC 
    CGAAATACTC GCTATTGTAT CTTCTGATAG TAGCTCGGAA TCCAAGCTTT 
    CCATGTTGTC CACTCTTTCA AAAGACACAA AGGCAAAACC CAGTGCTATG 
    CCAAATATTG TTGAGGAGGC AGAACCTGAA GGTGAGAAAG CGTACAATTC 
    CCTTTTAGGA GAACAGAACA AAGAGCATAA AGATGTGGTA GTTAAGGAAG 
    ATGACGAAAA CAAACTTTCA AAAGAAGAGG ATAAAGAGGT TGGAAGTAAC 
    GAAACTAAAA CCTATGTCAA CCATGAAAAT ACCGTGGAGG ACCACAAAGA 
    AGATGATGTT ACCCTTAATG ATGAGAAGGC CCGCAAATCA GAATCAGTCT 
    TCACCCTATC AAAAACTACT ACCACGCTGG TGACAACGTA AAGATGCTTG 
    CTTGAAGTCA TACATAATGA TGGTAATTCT GGTACGTGCC ACATCTCTGG 
    AAACGTTGAT GTTTCTTTTT ATGTATATAT ATAAATTGAC ATAGTTTGCA 
    GAAAAAGTGA TTCTGGGTTT GACTTGGTTG GTGCTGAGGA GAGAGGAGTA 
    GGTAAAGGTT GTATAGAAAA TTGAAGAGGC ATGATTTTGG TGGTTGCATT 
    TGTTTTAACC AATCATCTAA GCATAGGATT CATTAGTACT GGTTGTTTTA 
    GGTTTTATTT ATGCAATGTT TATTAGGAGA AAAGGATATC CATTTGTATT 
    TTGCCTTATT GTCACAAAAC TCCATGTAAA ACCAAAAAAA AAA

    Gene models with high sequence identity

    1. AT5G55600.1 [+] show detail - agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Agenet 3.1e-17
    HMMPfam Bromo adjacent homology (BAH) domain 3.6e-10
    ProfileScan Bromo adjacent homology (BAH) domain 14.706
    HMMSmart Bromo adjacent homology (BAH) domain 2.2e-07
    HMMSmart Tudor-like, plant 2.5e-15

    See the detailed result >

    AT5G55600.1

    Model type
    Protein coding
    Short Description
    agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
    Computational Description
    agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR