F08943

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F08943

Determination of introduced cDNA(s)

  • RAFL09-66-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-66-J21 - Resource: pda08646

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-66-J21 - full reading 
    AGCCGAGAAA CAACGCAAAC TCCGATTGAG AGGTGTTTGC ATGATTCCTG 
    AGCTTGTCTG TGTCAATAGT GAGGCACTAC ATCGAGGAAT AAGAAAGAAG 
    ATCTAAGGAG CTAAAGCTAT TATGTCAACG AACACTGAAT CTTCTTCTTA 
    TTCTTCTCTT CCTAGTCAAA GGCTTTTGGG TAAAGTGGCA TTGATCACTG 
    GAGGAGCCAC AGGGATAGGT GAGAGCATTG TTCGTCTGTT CCACAAGCAC 
    GGTGCCAAAG TCTGCATTGT TGATCTGCAA GATGATCTCG GAGGTGAGGT 
    GTGTAAAAGT CTGCTTCGTG GTGAGTCCAA GGAGACGGCT TTTTTCATCC 
    ATGGCGATGT TAGAGTGGAA GATGACATTA GCAATGCGGT TGACTTTGCA 
    GTCAAAAATT TTGGGACGCT TGATATACTT ATCAACAATG CAGGATTATG 
    TGGAGCACCG TGCCCTGATA TTCGTAATTA TAGTTTGAGT GAGTTCGAGA 
    TGACCTTTGA TGTGAATGTG AAAGGAGCTT TTCTAAGCAT GAAACATGCA 
    GCTCGTGTAA TGATACCGGA GAAGAAAGGG TCGATAGTTT CCTTATGTAG 
    TGTGGGAGGT GTTGTGGGAG GCGTTGGTCC ACATTCTTAT GTTGGTTCCA 
    AGCATGCTGT TCTAGGCTTG ACTAGGAGTG TTGCAGCGGA GCTTGGACAG 
    CACGGGATAC GTGTGAACTG TGTTTCGCCT TACGCGGTTG CAACTAAACT 
    CGCTTTGGCT CATTTGCCGG AGGAAGAAAG AACGGAGGAT GCATTTGTTG 
    GTTTCAGGAA TTTTGCTGCT GCAAACGCGA ATCTAAAAGG GGTGGAACTG 
    ACGGTTGATG ATGTAGCGAA CGCTGTTCTG TTTTTGGCTA GCGATGACTC 
    GCGGTACATA AGCGGAGATA ATTTGATGAT TGATGGAGGA TTCACTTGCA 
    CTAACCACTC CTTTAAAGTC TTCAGATGAT GCATTTTGCT AAAGAATGTT 
    GTTTAATGTT TATTGTCCGC CAATTTATCA TGTCTATCAA ATAATTTAAC 
    TGTGGAGCTT ATTGTGGTTT TAATTGTTAC TTTTAGCATT GTAGAAATGT 
    TTGATGTTAA CTACATTTCT TACTGGTAGA CATTGAACAA AATCAGATTC 
    TCATAATGAT TAAAAAGATT GAGTAG

    Gene models with high sequence identity

    1. AT1G52340.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 6.9e-71
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Short-chain dehydrogenase/reductase SDR 4.2e-12
    FPrintScan Short-chain dehydrogenase/reductase SDR 4.2e-12
    FPrintScan Short-chain dehydrogenase/reductase SDR 4.2e-12
    Gene3D NAD(P)-binding domain 4.1e-67
    HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 3.6e-150
    HMMPanther Short-chain dehydrogenase/reductase SDR 3.6e-150
    HMMPfam Short-chain dehydrogenase/reductase SDR 7.7e-27

    See the detailed result >

    AT1G52340.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Curator Summary
    Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose.
    Computational Description
    ABA DEFICIENT 2 (ABA2); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G51680.1); Has 120353 Blast hits to 120130 proteins in 3578 species: Archae - 983; Bacteria - 78428; Metazoa - 5777; Fungi - 6239; Plants - 2770; Viruses - 5; Other Eukaryotes - 26151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR