F08943

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08943

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F08943

Determination of introduced cDNA(s)

  • RAFL09-66-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-66-J21 - Resource: pda08646

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-66-J21 - full reading
    AGCCGAGAAA CAACGCAAAC TCCGATTGAG AGGTGTTTGC ATGATTCCTG 
    AGCTTGTCTG TGTCAATAGT GAGGCACTAC ATCGAGGAAT AAGAAAGAAG
    ATCTAAGGAG CTAAAGCTAT TATGTCAACG AACACTGAAT CTTCTTCTTA
    TTCTTCTCTT CCTAGTCAAA GGCTTTTGGG TAAAGTGGCA TTGATCACTG
    GAGGAGCCAC AGGGATAGGT GAGAGCATTG TTCGTCTGTT CCACAAGCAC
    GGTGCCAAAG TCTGCATTGT TGATCTGCAA GATGATCTCG GAGGTGAGGT
    GTGTAAAAGT CTGCTTCGTG GTGAGTCCAA GGAGACGGCT TTTTTCATCC
    ATGGCGATGT TAGAGTGGAA GATGACATTA GCAATGCGGT TGACTTTGCA
    GTCAAAAATT TTGGGACGCT TGATATACTT ATCAACAATG CAGGATTATG
    TGGAGCACCG TGCCCTGATA TTCGTAATTA TAGTTTGAGT GAGTTCGAGA
    TGACCTTTGA TGTGAATGTG AAAGGAGCTT TTCTAAGCAT GAAACATGCA
    GCTCGTGTAA TGATACCGGA GAAGAAAGGG TCGATAGTTT CCTTATGTAG
    TGTGGGAGGT GTTGTGGGAG GCGTTGGTCC ACATTCTTAT GTTGGTTCCA
    AGCATGCTGT TCTAGGCTTG ACTAGGAGTG TTGCAGCGGA GCTTGGACAG
    CACGGGATAC GTGTGAACTG TGTTTCGCCT TACGCGGTTG CAACTAAACT
    CGCTTTGGCT CATTTGCCGG AGGAAGAAAG AACGGAGGAT GCATTTGTTG
    GTTTCAGGAA TTTTGCTGCT GCAAACGCGA ATCTAAAAGG GGTGGAACTG
    ACGGTTGATG ATGTAGCGAA CGCTGTTCTG TTTTTGGCTA GCGATGACTC
    GCGGTACATA AGCGGAGATA ATTTGATGAT TGATGGAGGA TTCACTTGCA
    CTAACCACTC CTTTAAAGTC TTCAGATGAT GCATTTTGCT AAAGAATGTT
    GTTTAATGTT TATTGTCCGC CAATTTATCA TGTCTATCAA ATAATTTAAC
    TGTGGAGCTT ATTGTGGTTT TAATTGTTAC TTTTAGCATT GTAGAAATGT
    TTGATGTTAA CTACATTTCT TACTGGTAGA CATTGAACAA AATCAGATTC
    TCATAATGAT TAAAAAGATT GAGTAG

    Gene models with high sequence identity

    1. AT1G52340.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 6.9e-71
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Glucose/ribitol dehydrogenase 2.3e-37
    FPrintScan Short-chain dehydrogenase/reductase SDR 4.2e-12
    FPrintScan Short-chain dehydrogenase/reductase SDR 4.2e-12
    FPrintScan Short-chain dehydrogenase/reductase SDR 4.2e-12
    Gene3D NAD(P)-binding domain 4.1e-67
    HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 3.6e-150
    HMMPanther Short-chain dehydrogenase/reductase SDR 3.6e-150
    HMMPfam Short-chain dehydrogenase/reductase SDR 7.7e-27

    See the detailed result >

    AT1G52340.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Curator Summary
    Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose.
    Computational Description
    ABA DEFICIENT 2 (ABA2); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G51680.1); Has 120353 Blast hits to 120130 proteins in 3578 species: Archae - 983; Bacteria - 78428; Metazoa - 5777; Fungi - 6239; Plants - 2770; Viruses - 5; Other Eukaryotes - 26151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR