F09008

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09008

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F09008

Determination of introduced cDNA(s)

  • RAFL06-13-M02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-13-M02 - Resource: pda03174

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-13-M02 - full reading 
    CTCACTCACT ATTTTCACAT TCTCTTCTCT CTCGATATCA TCTAAATCTC 
    TCTCGATCTC AATTTCGCAA AATGGCTGAC AAGAAGATCA GAATCGGAAT 
    CAACGGTTTC GGAAGAATCG GTCGTTTGGT TGCTAGAGTT GTTCTTCAGA 
    GGGATGATGT TGAGCTCGTC GCTGTTAACG ATCCTTTCAT CACCACCGAG 
    TACATGACAT ACATGTTTAA GTATGACAGT GTTCACGGTC AGTGGAAGCA 
    CCATGAGCTT AAGGTGAAGG ATGACAAAAC TCTTCTCTTC GGTGAGAAGC 
    CAGTCACTGT TTTCGGCATC AGGAACCCTG AGGACATCCC ATGGGGTGAG 
    GCTGGAGCTG ACTTTGTTGT TGAGTCTACT GGTGTCTTCA CTGACAAAGA 
    CAAGGCTGCT GCTCACTTGA AGGGTGGTGC TAAAAAGGTT GTCATCTCTG 
    CCCCAAGCAA AGATGCGCCC ATGTTCGTTG TTGGTGTCAA CGAGCACGAG 
    TACAAGTCTG ACCTTGACAT TGTTTCCAAC GCTAGTTGCA CCACTAACTG 
    CCTTGCTCCT CTTGCCAAGG TTATTAATGA CAGGTTTGGC ATTGTTGAGG 
    GACTCATGAC CACTGTCCAC TCTATCACTG CTACTCAGAA GACAGTTGAT 
    GGTCCATCAA TGAAGGACTG GAGAGGTGGA AGAGCTGCTT CCTTCAACAT 
    TATTCCTAGC AGCACTGGTG CCGCCAAGGC TGTTGGGAAA GTGTTGCCAT 
    CCCTCAATGG AAAATTGACC GGAATGTCTT TCCGTGTTCC AACCGTTGAT 
    GTCTCAGTTG TTGATCTCAC CGTTAGACTT GAGAAAGCTG CAACATACGA 
    CGAAATCAAG AAGGCCATCA AGGAGGAATC TGAAGGCAAA ATGAAGGGAA 
    TTTTGGGATA CACTGAGGAT GATGTTGTGT CTACCGACTT TGTTGGTGAC 
    AACAGGTCAA GCATTTTCGA TGCCAAGGCT GGGATTGCAT TGAGCGACAA 
    GTTTGTGAAG TTGGTGTCAT GGTACGACAA CGAATGGGGT TACAGTTCTC 
    GTGTCGTTGA CCTTATCGTT CACATGTCAA AGGCCTAAGC TTACACCGGC 
    GAGAGTTTGT GTGTGGTTGA GTTCGTACTG TTCTGAATAA AAAAAAGGAG 
    AAAAGAAAAC TCGAGTTGTT ATGTTTTTTC ACTGATTCCA TGCGCAGTCA 
    TGAGAGTTTG TAGCTTTTGT CTTTTTGCTT TCTCTTAATG TTTCCCTGCT 
    TTATTTACTG AAACCATTGG TTTGGTTTTT TATGTTAATT AAGTTTTTAG 
    TTCAC

    Gene models with high sequence identity

    1. AT1G13440.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
    Gene3D no description 2.2e-81
    HMMSmart Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 4.2e-89
    HMMTigr Glyceraldehyde-3-phosphate dehydrogenase, type I 2.1e-198
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain 1.2e-74
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 3e-56
    HMMPIR Glyceraldehyde 3-phosphate dehydrogenase family 1.7e-177
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 2.2e-83
    superfamily NAD(P)-binding domain 1.6e-68
    PatternScan Glyceraldehyde 3-phosphate dehydrogenase, active site 0
    HMMPanther Glyceraldehyde 3-phosphate dehydrogenase subfamily 9.1e-271

    See the detailed result >

    AT1G13440.1

    Model type
    Protein coding
    Short Description
    glyceraldehyde-3-phosphate dehydrogenase C2
    Computational Description
    glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2); FUNCTIONS IN: copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1); Has 25382 Blast hits to 25370 proteins in 6374 species: Archae - 87; Bacteria - 10988; Metazoa - 2357; Fungi - 2864; Plants - 3864; Viruses - 0; Other Eukaryotes - 5222 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR