F09012

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09012

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09012

Determination of introduced cDNA(s)

  • RAFL06-73-E06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-73-E06 - Resource: pda17232

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-73-E06 - full reading 
    CCCGATTTCG CAGCTGCCTC CTTTTCGTTT GCCACTTTTT GATCAAGCGA 
    AACTCCAAAA CACAGAGCCA TGCCGCCGAA GTTGGACCCG AGCCAGATCG 
    TCGATGTGTA CGTCCGTGTA ACCGGAGGAG AAGTGGGAGC CGCCAGTTCT 
    CTAGCTCCAA AGATCGGTCC TCTCGGTCTC GCACCAAAGA AGATCGGAGA 
    AGACATCGCG AAAGAGACGG CCAAAGAATG GAAAGGACTT CGTGTCACCG 
    TGAAGCTGAC GGTTCAGAAT CGTCAAGCTA AGGTAACCGT GGTTCCATCT 
    GCTGCAGCTC TCGTCATCAA GGCGTTGAAG GAGCCAGAGA GAGACCGTAA 
    GAAGGTGAAG AACATTAAGC ATAACGGTAA CATCTCTTTC GATGATGTGA 
    CTGAGATTGC TAGGATTATG AGGCCTAGAT CTATTGCTAA GGAGCTGAGT 
    GGGACTGTGA GGGAGATTCT TGGAACGTGT GTCTCTGTGG GATGCACTGT 
    TGATGGGAAA GACCCTAAGG ATCTTCAGCA GGAGATTCAA GAAGGTGAGA 
    TTGAGATTCC TGAGAATTAA GGAACAATGG AGTTTTTTTT TCTTCTTATG 
    GGAATTTGAA ATGCTTCTGT TGTTATCTTT CTCGTTTTAC CATATTTTGT 
    TTTTGTTTGG GAACTTAGCT GCTATGATGT TTCACTTAGA ATGACTCTCA 
    AGTTTTGGAT TCTTATTATT CTCTGTTTCA AAACCCCAAT GGTTCTCTAG 
    CAAAAAAAAA A

    Gene models with high sequence identity

    1. AT3G53430.1 [+] show detail - Ribosomal protein L11 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ribosomal protein L11 5.7e-57
    Gene3D Ribosomal protein L11, N-terminal domain 3.8e-33
    PatternScan Ribosomal protein L11, conserved site 0
    superfamily Ribosomal protein L11, C-terminal domain 7.4e-20
    superfamily Ribosomal protein L11, N-terminal domain 8.9e-07
    HMMPanther 60S RIBOSOMAL PROTEIN L12 1.1e-119
    HMMPanther Ribosomal protein L11 1.1e-119
    HMMPfam Ribosomal protein L11, N-terminal domain 1.6e-16
    HMMPfam Ribosomal protein L11, C-terminal domain 5.8e-13

    See the detailed result >

    AT3G53430.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L11 family protein
    Computational Description
    Ribosomal protein L11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, C-terminal domain (InterPro:IPR020783), Ribosomal protein L11, N-terminal domain (InterPro:IPR020784), Ribosomal protein L11, conserved site (InterPro:IPR020785), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT2G37190.1); Has 1591 Blast hits to 1591 proteins in 594 species: Archae - 303; Bacteria - 412; Metazoa - 359; Fungi - 167; Plants - 131; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR