F09023

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09023

Determination of introduced cDNA(s)

RAFL03-01-D05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-01-D05 - Resource: pda02270

full reading [+] show sequence

GACGACACAA AAACCTTGCA TTTGCATCCA TGGCGTCGAT GCCGAGCAAA 
CTTCTTCCAG TCCTAGTCTG CTACGTTTTT CTTTTCCCCT TTGCATCATC 
ATCTGATTAT TCTGGGGTAT CTCTTCCATC TTCGTCGCCT AAAGTCTCGG 
TGGGCCTGTA CTACGAGTCT CTCTGTCCCT ACTGCTCTTC CTTCATTGTT 
AACCACCTCG CGAAGCTCTT CGAAGACGAT CTCATATCAA TCGTCGATCT 
CCATCTCTCT CCGTGGGGCA ATACCAAGCT CCGTTCCGAT AACGTCACTG 
CCGTTTGCCA GCATGGGGCA TTTGAATGCT TCTTGGATAC CGTAGAAGCT 
TGTGCAATTG ATGCTTGGCC TAAAGTAAGC GATCATTTCC CGTTCATATA 
CTGTGTCGAG AAGTTGGTGA CTGAACATAA GTATGACAAG TGGGAGACGT 
GTTATGAGAA GCTCAATCTC AACTCGAAAC CTGTTGCAGA TTGTCTCAGC 
AGTGGACATG GGAATGAGCT TGCTTTGCAC TATGCTGCAG AAACGAATGC 
GCTTCAGCCT CCTCACAAGT ATGTGCCCTG GGTAGTCGTG GATGGTCAGC 
CACTTTATGA GGACTATGAA AACTTCATAA GCTACATCTG CAAGGCTTAC 
AAAGGTAATA AAGTACCTGG CGCATGTACC AAATATGCAA CCGGCAACTT 
CATTCGTAGT GTCAAATTGA AACGCTCCCC TCTGGTGTCC TGGAAAGGCG 
TGAATAAGAT GTGGGATGTG TTGGAACGTA TCACAACCTC TTTATCGTCA 
TACATCGACA TCACCGGCCT GCTATGAACA CTTCCTGTAT CTTTTTCCCA 
TGTAACAAAC CACCCCAAAA AGCTATCTAG ATTCTGATAT TTAATGAATG 
TGTGTAATCT TTATGTTTCA TCAAAATGTA TGTTTGTTGG GTTGTGAGAG 
GCCTTTCAAG AATCACATGT TGGGTAAAAA ACCTATTTCG GTTTAGACGG 
GTTTTGTTTC TCTTATTTGT TTCGGTGAAG TTGTAGACTG TAGTATGAAA 
GGAGCCTATC AGGGTTGACG ATGGAACAGT AGTGAGGACC GTGACCCACT

Gene models with high sequence identity

AT1G07080.1 [+] show detail - Thioredoxin superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Thioredoxin-like fold	1.4e-09
HMMPfam	Gamma interferon inducible lysosomal thiol reductase GILT	5.3e-27
HMMPanther	LYSOSOMAL THIOL REDUCTASE-RELATED	8.8e-134
HMMPanther	Gamma interferon inducible lysosomal thiol reductase GILT	8.8e-134

See the detailed result >

AT1G07080.1

Model type: Protein coding
Short Description: Thioredoxin superfamily protein
Computational Description: Thioredoxin superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol (GILT) reductase family protein (TAIR:AT5G01580.1); Has 470 Blast hits to 463 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link: InterPro Scan - TAIR