F09027

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09027

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09027

Determination of introduced cDNA(s)

RAFL09-72-H13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-72-H13 - Resource: pda06793

full reading [+] show sequence

GTTTGTAGTA TAAATATCCT TCTCTTCGTC CCTCTCATCG CCTGTCTCTC 
CTCTTCCTCT TCCCGTTCCA TTTATCCGCA AACGGAGCTT GTTTTCGGTG 
CACCTGCTTC AGCCACTTCA AACTTGAACT GAGAAGGATG GGAAACGAAT 
CATATGAAGA CGCCATCGAA GCTCTCAAGA AGCTTCTCAT TGAGAAGGAT 
GATCTGAAGG ATGTAGCTGC GGCCAAGGTG AAGAAGATCA CGGCGGAGCT 
TCAGGCAGCC TCGTCATCGG ACAGCAAATC TTTTGATCCC GTCGAACGAA 
TTAAGGAAGG CTTCGTCACC TTCAAGAAGG AGAAATACGA GACCAATCCT 
GCTTTGTATG GTGAGCTCGC CAAAGGTCAA AGCCCAAAGT ACATGGTGTT 
TGCTTGTTCG GACTCACGAG TGTGCCCATC ACACGTACTA GACTTCCATC 
CTGGAGATGC CTTCGTGGTT CGTAATATCG CCAATATGGT TCCTCCTTTT 
GACAAGGTCA AATATGCAGG AGTTGGAGCC GCCATTGAAT ACGCTGTCTT 
GCACCTTAAG GTGGAAAACA TTGTGGTGAT AGGGCACAGT GCATGTGGTG 
GCATCAAGGG GCTTATGTCA TTTCCTCTTG ACGGAAACAA CTCTACTGAC 
TTCATAGAGG ATTGGGTCAA AATCTGTTTA CCAGCAAAGT CAAAAGTTTT 
GGCAGAAAGT GAAAGTTCAG CATTTGAAGA CCAATGTGGC CGATGCGAAA 
GGGAGGCAGT GAATGTGTCA CTAGCAAACC TATTGACATA TCCATTTGTG 
AGAGAAGGAG TTGTGAAAGG AACACTTGCT TTGAAGGGAG GCTACTATGA 
CTTTGTTAAT GGCTCCTTTG AGCTTTGGGA GCTCCAGTTT GGAATTTCCC 
CCGTTCATTC TATATGAACT AACACATCAC CATCACCATC GCTACCACCA 
CCATCACAAA CATCATCATC GTCGTCATCA TCATGATCAG CATCTTCATA 
TATAAATGTT TTACTCTTAT TTAATTGCTA CTTGTAATGG TATACATTTA 
CTTGCGATGA GCTTCTTTTC CTTCATTATC CAGTTATAAA ATAAAT

Gene models with high sequence identity

AT5G14740.1 [+] show detail - carbonic anhydrase 2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Carbonic anhydrase	9.3e-68
superfamily	Carbonic anhydrase	1.1e-66
Coil	coiled-coil	0
HMMPanther	CARBONIC ANHYDRASE	1.2e-96
HMMPanther	Carbonic anhydrase	1.2e-96
PatternScan	Carbonic anhydrase, prokaryotic-like, conserved site	0
PatternScan	Carbonic anhydrase, prokaryotic-like, conserved site	0
HMMPfam	Carbonic anhydrase	1.9e-42

See the detailed result >

AT5G14740.1

Model type: Protein coding
Short Description: carbonic anhydrase 2
Curator Summary: Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
Computational Description: carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 5122 Blast hits to 5105 proteins in 1527 species: Archae - 36; Bacteria - 3955; Metazoa - 59; Fungi - 207; Plants - 361; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
Link: InterPro Scan - TAIR