F09106

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09106

Determination of introduced cDNA(s)

  • RAFL09-51-D07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-51-D07 - Resource: pda06496

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-51-D07 - full reading 
    ATCACCACAT GCGACACACC AACACCAATG TCTGCTTCTT CTTTATTTAA 
    TCTCCCATTG ATTCGCCTCA GATCTCTCGC TCTTTCGTCT TCTTTTTCTT 
    CTTTCCGATT TGCCCATCGT CCTCTGTCAT CGATTTCACC GAGAAAGTTA 
    CCGAATTTTC GTGCTTTCTC TGGTACCGCT ATGACAGATA CTAAAGATGC 
    TGGTATGGAT GCTGTTCAGA GACGTCTCAT GTTTGAGGAT GAATGCATTC 
    TTGTTGATGA AACTGATCGT GTTGTGGGGC ATGACAGCAA GTATAATTGT 
    CATCTGATGG AAAATATTGA AGCCAAGAAT TTGCTGCACA GGGCTTTTAG 
    TGTATTTTTA TTCAACTCGA AGTATGAGTT GCTTCTCCAG CAAAGGTCAA 
    ACACAAAGGT TACGTTCCCT CTAGTGTGGA CTAACACTTG TTGCAGCCAT 
    CCTCTTTACC GTGAATCAGA GCTTATCCAG GACAATGCAC TAGGTGTGAG 
    GAATGCTGCA CAAAGAAAGC TTCTCGATGA GCTTGGTATT GTAGCTGAAG 
    ATGTACCAGT CGATGAGTTC ACTCCCTTGG GACGTATGCT GTACAAGGCT 
    CCTTCTGATG GCAAATGGGG AGAGCATGAA CTTGATTACT TGCTCTTCAT 
    CGTGCGAGAC GTGAAGGTTC AACCAAACCC AGATGAAGTA GCTGAGATCA 
    AGTATGTGAG CCGGGAAGAG CTGAAGGAGC TGGTGAAGAA AGCAGATGCA 
    GGTGAGGAAG GTTTGAAACT GTCACCATGG TTCAGATTGG TGGTGGACAA 
    TTTCTTGATG AAGTGGTGGG ATCATGTTGA GAAAGGAACT TTGGTTGAAG 
    CTATAGACAT GAAAACCATC CACAAACTCT GAACATCTTT TTTTAAAGTT 
    TTTAAATCAA TCAACTTTCT CTTCATCATT TTTATCTTTT CGATGATAAT 
    AATTTGGGAT ATGTGAGACA CTTACAAAAC TTCCAAGCAC CTCAGGCAAT 
    AATAAAGTTT TCGTTTTTAT CT

    Gene models with high sequence identity

    1. AT3G02780.1 [+] show detail - isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NUDIX hydrolase domain-like 9.3e-37
    Gene3D NUDIX hydrolase domain 4.8e-48
    HMMPfam NUDIX hydrolase domain 2.2e-27
    HMMPIR Isopentenyl-diphosphate delta-isomerase, type 1 5e-128
    HMMPanther Isopentenyl-diphosphate delta-isomerase, type 1 4.4e-127
    HMMTigr Isopentenyl-diphosphate delta-isomerase, type 1 3e-104

    See the detailed result >

    AT3G02780.1

    Model type
    Protein coding
    Short Description
    isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
    Curator Summary
    Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.
    Computational Description
    isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (IPP2); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: chlorophyll biosynthetic process, flower development, isoprenoid biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: isopentenyl diphosphate isomerase 1 (TAIR:AT5G16440.1); Has 2187 Blast hits to 2186 proteins in 784 species: Archae - 35; Bacteria - 1163; Metazoa - 210; Fungi - 137; Plants - 180; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR