F09136

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09136

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09136

Determination of introduced cDNA(s)

  • RAFL06-71-A01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-71-A01 - Resource: pda07653

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-71-A01 - full reading 
    GGGTTTCTCA TCTACGACGG CGTGGTGTTC CTCCTTCCTG CTCTGAAAAA 
    TGGCGAAGAG AACGAAGAAG GTTGGAATCG TCGGCAAATA CGGAACACGT 
    TATGGTGCGA GTATCAGGAA GCAGATTAAG AAGATGGAGG TCAGCCAGCA 
    CAGCAAGTAC TTCTGTGAGT TCTGTGGCAA GTACGGAGTG AAGCGAAAGG 
    CTGTTGGTAT CTGGGGTTGC AAGGATTGTG GCAAGGTCAA GGCAGGTGGT 
    GCTTACACAA TGAACACCGC CAGTGCGGTC ACTGTTAGAA GCACGATCAG 
    AAGGTTGAGG GAGCAGATCG AGGGTTAAAA GTCTGCTGGC TTTTTATATT 
    TGGTTTCCTT GTTTTGACAA TTTAAGTTTT GCAAACTCTA TGCTTGTGAT 
    TTTGAATCAA GACTTATACA TTGAGCAGTT TAAGCAGGTT TTTATGAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G60245.1 [+] show detail - Zinc-binding ribosomal protein family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L37ae 1.4e-42
    superfamily Ribosomal protein, zinc-binding domain 9.1e-32
    HMMPfam Ribosomal protein L37ae 8.6e-39
    Gene3D Ribosomal protein L37ae/L37e, N-terminal domain 9.1e-28
    HMMPanther 60S RIBOSOMAL PROTEIN L37A 1.4e-60
    HMMPanther Ribosomal protein L37ae 1.4e-60

    See the detailed result >

    AT3G60245.1

    Model type
    Protein coding
    Short Description
    Zinc-binding ribosomal protein family protein
    Computational Description
    Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae (InterPro:IPR002674), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G10950.1); Has 1052 Blast hits to 1052 proteins in 365 species: Archae - 290; Bacteria - 0; Metazoa - 325; Fungi - 120; Plants - 130; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR