F09145

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09145

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09145

Determination of introduced cDNA(s)

  • RAFL05-15-L10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-L10 - Resource: pda02650

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-L10 - full reading 
    TGATTCTAGG GTTTTAGAGT TTCCGCACGA ATCACGAATC TCTCTCTCTT 
    TCACACACTT CACACTTTCA ATATACACTC TCATTATGAC TACCGAAGAG 
    AAAGAGATCC TCGCCGCCAA ATTGGAAGAA CAGAAGATCG ATCTCGATAA 
    GCCCGAAGTT GAGGACGATG ATGATAACGA AGACGATGAC TCTGATGACG 
    ATGATAAGGA TGATGACGAG GCTGATGGAC TAGATGGAGA GGCAGGAGGT 
    AAGTCAAAAC AAAGCAGAAG TGAGAAGAAG AGTCGCAAAG CCATGCTCAA 
    GCTTGGCATG AAACCCATCA CTGGTGTTAG CCGAGTCACC GTCAAAAAGA 
    GCAAGAATAT CTTGTTTGTC ATATCAAAGC CTGATGTGTT CAAGAGTCCA 
    GCATCAGACA CATATGTGAT CTTTGGAGAG GCGAAGATCG AGGATTTGAG 
    CTCTCAGATC CAGTCGCAAG CAGCAGAGCA ATTCAAGGCA CCAGATCTCA 
    GCAATGTGAT CTCAAAGGGT GAGTCATCGA GCGCTGCAGT GGTTCAGGAT 
    GATGAGGAGG TTGACGAGGA AGGTGTTGAG CCAAAGGACA TTGAGTTGGT 
    GATGACTCAA GCAGGAGTGT CTAGGCCAAA TGCTGTGAAG GCTCTCAAGG 
    CTGCAGATGG AGATATTGTC TCTGCCATCA TGGAGCTTAC CACCTAAACC 
    AAAGTCTTTT CTACTTAGAT GTGGTTTAAC CTGAGTTATG TGCCAGAGAT 
    TGTCTAAAGA ATTCGGAAAT TTTTGGTTTC AATGTTTTTC ATGAAGTGAT 
    TTTCGATGTT GTATCAGTAT AAACCTCATA AGTTTTTGAT TTTCAGTTTG 
    ATTTTATATT G

    Gene models with high sequence identity

    1. AT3G12390.1 [+] show detail - Nascent polypeptide-associated complex (NAC), alpha subunit family protein
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Nascent polypeptide-associated complex, alpha subunit 4.4e-83
    ProfileScan Nascent polypeptide-associated complex NAC 18.078
    HMMPfam Nascent polypeptide-associated complex NAC 1e-23
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 5.9e-05

    See the detailed result >

    AT3G12390.1

    Model type
    Protein coding
    Short Description
    Nascent polypeptide-associated complex (NAC), alpha subunit family protein
    Computational Description
    Nascent polypeptide-associated complex (NAC), alpha subunit family protein; INVOLVED IN: response to salt stress; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: nascent polypeptide-associated complex subunit alpha-like protein 3 (TAIR:AT5G13850.1); Has 5275 Blast hits to 2514 proteins in 367 species: Archae - 69; Bacteria - 684; Metazoa - 1880; Fungi - 785; Plants - 552; Viruses - 60; Other Eukaryotes - 1245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR