F09211

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09211

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F09211

Determination of introduced cDNA(s)

  • RAFL14-84-B09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-84-B09 - Resource: pda12468

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-84-B09 - full reading 
    CTGGAATTTG AGTAAAAGCA AGAAAAAAAG TCAACCGTTG CAACAAACTC 
    TTAAAAAGAA GCAAAGTAGT AGCAGAAGAA GAAGAAGAAG AAGAAGAAAA 
    GAAAATGGCA GGAGGGTCGT TTGGTCCGAC CGGTGTGGCT AAGGAGAGAG 
    CAGAACAATA CCAAGGGAAA GTCACTAGTT ATGTTATAAT CGCTTGCCTT 
    GTTGCAGCTA TTGGTGGATC CATCTTTGGA TATGACATTG GAATCTCAGG 
    AGGAGTTACA TCGATGGATG AGTTTCTTGA GGAGTTTTTC CACACGGTTT 
    ATGAGAAGAA GAAGCAAGCT CATGAAAGTA ATTACTGCAA ATATGATAAT 
    CAAGGCTTAG CTCTGATGAA TCCCCTAATG ATTTTGGTAA AAATCATTAA 
    GTTAAGGTGG ATACACATCT TGTCATATGA TCAAATGGTT TCGCGAAAAA 
    TCAATAATCA GACAACAAGA TGTGCGAACT CGATATTTTA CACGACTCTC 
    TTTACCAATT CTGCCCCGAA TTACACTTAA AACGACTCAA CAGCTTAACG 
    TTGGCTTGCC ACGCATTACT TGACTGTAAA ACTCTCACTC TTACCGAACT 
    TGGCCGTAAC CTGCCAACCA AAGCGAGAAC AAAACATAAC ATCAAACGAA 
    TCGACCGATT GTTAGGTAAT CGTCACCTCC ACAAAGAGCG ACTCGCTGTA 
    TACCGTTGGC ATGCTAGCTT TATCTGTTCG GGCAATACGA TGCCCATTGT 
    ACTTGTTGAC TGGTCTGATA TTCGTGAGCA AAAACGACTT ATGGTATTGC 
    GAGCTTCAGT CGCACTACAC GGTCGTTCTG TTACTCTTTA TGAGAAAGCG 
    TTCCCGCTTT CAGAGCAATG TTCAAAGAAA GCTCATGACC AATTTCTAGC 
    CGACCTTGCG AGCATTCTAC CGAGTAACAC CACACCGCTC ATTGTCAGTG 
    ATGCTGGCTT TAAAGTGCCA TGGTATAAAT CCGTTGAGAA GCTGGGTTGG 
    TACTGGTTAA GTCGAGTAAG AGGAAAAGTA CAATATGCAG ACCTAGGAGC 
    GGAAAACTGG AAACCTATCA GCAACTTACA TGATATGTCA TCTAGTCACT 
    CAAAGACTTT AGGCTATAAG AGGCTGACTA AAAGCAATCC AATCTCATGC 
    CAAATTCTAT TGTATAAATC TCGCTCTAAA GGCCGAAAAA ATCAGCGCTC 
    GACACGGACT CATTGTCACC ACCCGTCACC TAAAATCTAC TCAGCGTCGG 
    CAAAGGAGCC ATGGGTTCTA GCAACTAACT TACCTGTTGA AATTCGAACA 
    CCCAAACAAC TTGTTAATAT CTATTCGAAG CGAATGCAGA TTGAAGAAAC 
    CTTCCGAGAC TTGAAAAGTC CTGCCTACGG ACTAGGCCTA CGCCATAGCC 
    GAACGAGCAG CTCAGAGCGT TTTGATATCA TGCTGCTAAT CGCCCTGATG 
    CTTCAACTAA CATGTTGGCT TGCGGGCGTT CATGCTCAGA AACAAGGTTG 
    GGACAAGCAC TTCCAGGCTA ACACAGTCAG AAATCGAAAC GTACTCTCAA 
    CAGTTCGCTT AGGCATGGAA GTTTTGCGGC ATTCTGGCTA CACAATAACA 
    AGGGAAGACT TACTCGTGGC TGCAACCCTA CTAGCTCAAA ATTTATTCAC 
    ACATGGTTAC GCTTTGGGGA AATTATGAGG GGATCTCTCA GGGCTTAGCT 
    GCTTTCACTT CTTCACTCTA CTTAGCTGGT TTGGTTTCGA CTCTCGTGGC 
    TTCACCCATC ACTAGGAACT ACGGTAGGCG TGCGAGTATT GTTTGTGGTG 
    GAATCAGCTT TCTTATTGGA TCTGGTTTGA ATGCTGGAGC TGTGAACTTA 
    GCTATGCTTC TTGCCGGACG GATCATGCTT GGTGTTGGTA TTGGATTTGG 
    AAATCAGGCG GTTCCTTTGT ATTTATCAGA AGTGGCACCA ACTCATCTAC 
    GAGGTGGTTT AAACATGATG TTTCAGCTAG CTACAACTAT CGGGATCTTT 
    ACAGCGAACA TGGTTAATTA CGGTACTCAA CAGCTTAAGC CTTGGGGATG 
    GAGACTCTCT CTTGGTTTAG CTGCTTTTCC AGCTCTGCTT ATGACGCTTG 
    GCGGGTATTT CTTACCCGAG ACACCAAACA GTTTGGTCGA AAGAGGATTA 
    ACAGAGAGAG GTCGACGAGT CTTAGTGAAG CTAAGAGGAA CAGAAAACGT 
    CAACGCCGAG CTTCAAGACA TGGTAGATGC GAGTGAGCTT GCGAATTCCA 
    TCAAACATCC ATTCAGAAAC ATCTTGCAGA AACGACACAG GCCTCAGCTA 
    GTTATGGCTA TTTGCATGCC AATGTTTCAG ATACTCACAG GGATAAACTC 
    CATTCTCTTC TACGCACCTG TTCTGTTCCA GACAATGGGG TTTGGAGGAA 
    ACGCATCTCT CTATTCATCA GCTTTAACAG GAGCTGTTCT TGTCCTATCA 
    ACATTTATTT CCATAGGATT AGTAGACAGA TTGGGACGAA GAGCTCTTCT 
    CATAACTGGA GGAATACAAA TGATAATCTG TCAAGTCATA GTAGCAGTGA 
    TCTTAGGAGT GAAATTTGGA GACAACCAAG AGCTATCAAA AGGGTACTCA 
    GTGATCGTAG TCATCTTCAT CTGCCTCTTT GTTGTAGCGT TCGGATGGTC 
    ATGGGGTCCT CTAGGTTGGA CCATACCTAG CGAAATCTTT CCGTTAGAGA 
    CTCGTTCAGC GGGGCAGAGT ATCACAGTAG CTGTAAATCT CCTCTTCACT 
    TTCATCATAG CTCAAGCTTT CCTTGGTCTC CTCTGTGCAT TCAAGTTTGG 
    AATCTTCCTC TTCTTTGCTG GTTGGGTGAC AGTAATGACT ATCTTTGTGT 
    ATTTCCTGTT GCCTGAAACC AAAGGAGTTC CAATAGAAGA GATGACACTC 
    TTATGGAGTA AACATTGGTT CTGGAAAAAA GTATTACCTG ATGCAACAAA 
    TCTTGAAGAT GAGAGCAAGA ATGTATCTGT TTAAAGAGAA TATAAACTGA 
    TTCAAGAAAC TTATGTTTGT ATTACTATAA GGTTTTTTAT TGCATAAGGA 
    GAGATTTGAA TCCCAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT4G02050.1 [+] show detail - sugar transporter protein 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transposase, IS4-like 2.9e-28
    HMMPfam General substrate transporter 5.8e-06
    HMMPfam General substrate transporter 1.1e-112
    HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 2e-42
    HMMPanther SUGAR TRANSPORTER 2e-42
    HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 1.4e-172
    HMMPanther SUGAR TRANSPORTER 1.4e-172
    HMMPanther TRANSPOSASE RELATED 1.2e-125
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    ProfileScan MFS 43.769
    FPrintScan Sugar/inositol transporter 1e-23
    FPrintScan Sugar/inositol transporter 1e-23
    FPrintScan Sugar/inositol transporter 1e-23
    FPrintScan Sugar/inositol transporter 1e-23
    superfamily Polynucleotidyl transferase, ribonuclease H fold 1.6e-62
    superfamily Major facilitator superfamily, general substrate transporter 1.6e-57
    HMMTigr Sugar/inositol transporter 3.4e-85
    Coil coiled-coil 0

    See the detailed result >

    AT4G02050.1

    Model type
    Protein coding
    Short Description
    sugar transporter protein 7
    Computational Description
    sugar transporter protein 7 (STP7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26340.1); Has 26348 Blast hits to 25870 proteins in 1897 species: Archae - 376; Bacteria - 11847; Metazoa - 3711; Fungi - 6732; Plants - 2516; Viruses - 0; Other Eukaryotes - 1166 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR