F09214

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09214

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09214

Determination of introduced cDNA(s)

  • RAFL07-11-J07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-11-J07 - Resource: pda04139

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-11-J07 - full reading
    TCGCAGATTT TCCTCTCTAG TCTCCGTCTT CTATTACCAG ATCGAGCTTT 
    GTTCTTCGAG CTTCTCATCT CTTTGTTCAA TCTCAAAGGT TCTTGCTGTT
    TTTCATTTAC AGGTTTTTGA GTATCAGCAA AGATGGGTGA CAATCTTATG
    GACAAAGTTA CCGCATTTGG TGAGCGCCTG AAGATCGGAG GTTCGGAAGT
    GAGCAACAAG ATCAGTGCTG GTGTGAGCTC AATGAGCTTT AAAGTGAAGG
    AACTTTTTCA AGGTCCAAAC CCAACTGATA AAATAGTCGA AGATGCTACT
    ACTGAGAATC TAGAGGAACC TGACTGGGAT ATGAATTTGG AAATTTGTGA
    TATGATAAAT CAAGAGACAA TTAATAGCGT TGAGTTGATC CGTGGTATAA
    AGAAGAGGAT TATGATGAAG CAGCCGAGGA TTCAGTACCT TGCCTTGGTT
    TTGCTCGAGA CGTGTGTTAA GAACTGTGAG AAGGCGTTTT CAGAGGTGGC
    AGCAGAGAGA GTCCTTGATG AAATGGTAAA GCTGATTGAT GATCCACAAA
    CAGTTGTTAA TAACCGAAAC AAAGCTTTGA TGCTGATTGA AGCTTGGGGA
    GAATCAACCA GTGAACTTCG CTACCTACCA GTTTTCGAAG AAACTTATAA
    GAGCTTAAAA GCAAGAGGTA TTCGCTTCCC TGGACGAGAC AACGAAAGCT
    TGGCACCTAT TTTCACTCCT GCTCGGTCAA CTCCAGCACC AGAACTGAAT
    GCTGATCTTC CTCAGCATGT GCATGAACCT GCACATATCC AGTATGATGT
    GCCTGTAAGA AGCTTTACTG CTGAGCAGAC AAAGGAAGCT TTTGATATAG
    CAAGAAACAG CATTGAACTT CTTTCCACGG TTCTGTCCTC CTCGCCTCAA
    CATGATGCTT TACAGGATGA CTTAACAACG ACACTTGTAC AACAATGTCG
    TCAATCTCAA ACCACTGTCC AAAGAATCAT TGAAACAGCA GGTGAAAACG
    AAGCCCTTCT TTTCGAAGCC TTGAATGTGA ACGACGAGCT AGTGAAAACG
    CTGTCTAAGT ATGAGGAGAT GAACAAACCC TCTGCACCGC TAACCTCACA
    TGAACCAGCC ATGATTCCCG TTGCTGAAGA GCCCGATGAC TCTCCAATTC
    ATGGAAGAGA AGAATCTCTG GTTAGAAAAT CTTCTGGTGT TCGAGGTGGA
    TTCCATGGAG GGGGTGGTAG TGGAGATGAC ATGATGGATG ATCTTGATGA
    GATGATATTC GGTAAGAAAA ACGGCTGTGA TTCTTCGACT AATCCAGATC
    ATGACCCAAA AAAGGAGCAG TCCTCATCCA AAAACGACGA TCTCATTCGA
    TTCTGAGACG GATACTTTCA GGCGACATAA TAAATCTTTT ATAATGTATT
    TGGTGTTTAA TTGGTAGTAT GAATGAACAG GTTCAATGTA AGTAATCTGT
    GTTTGGAGAT CTCTTTGACT TGTGTGATGG TTTATAAAGG AGATTTGTTA
    TGATGGCACA TGAGATTTGA AATACATTCT ATTCTAGTTT CTGCT

    Gene models with high sequence identity

    1. AT5G16880.1 [+] show detail - Target of Myb protein 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan VHS 38.507
    ProfileScan GAT 15.233
    HMMPfam VHS 4.5e-26
    HMMPfam GAT 1.4e-20
    superfamily ENTH/VHS 2.3e-45
    superfamily GAT-like domain 5.7e-28
    Gene3D ENTH/VHS 3.6e-37
    Gene3D no description 0.00062
    HMMPIR Target of Myb protein 1 2e-214
    HMMSmart VHS subgroup 3.4e-27
    HMMPanther TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN 8.7e-77
    HMMPanther VHS DOMAIN CONTAINING PROTEIN FAMILY 8.7e-77

    See the detailed result >

    AT5G16880.1

    Model type
    Protein coding
    Short Description
    Target of Myb protein 1
    Computational Description
    Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR