F09222

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09222

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09222

Determination of introduced cDNA(s)

  • RAFL04-14-C12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-14-C12 - Resource: pda00363

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-14-C12 - full reading 
    TCCCCTAATT TCGCTTCGAA TTCAAAAGCC CTAATTCGAA AATTCCCATT 
    TCTCAAGGTT TTTAAAAGAG TATTGCAAAG ATGTCTTCTG ATTCGTCCCG 
    GGAAGAGAAT GTGTACTTGG CCAAGTTAGC CGAGCAAGCT GAGCGTTACG 
    AGGAAATGGT TGAGTTCATG GAGAAAGTTG CAAAGACCGT GGAGACCGAG 
    GAACTTACTG TTGAAGAGAG GAATCTCTTG TCTGTTGCTT ACAAGAACGT 
    GATTGGTGCT AGGAGAGCTT CTTGGAGGAT TATCTCTTCC ATTGAGCAGA 
    AGGAAGATAG CAGGGGCAAC AGTGATCATG TTTCGATTAT CAAGGATTAC 
    AGAGGCAAGA TTGAAACTGA GCTCAGCAAG ATTTGTGATG GCATTTTGAA 
    CCTTCTTGAG GCTCATCTCA TTCCTGCTGC TTCTTTGGCT GAGTCCAAAG 
    TTTTTTACCT GAAGATGAAG GGAGATTATC ATCGGTACCT TGCTGAATTC 
    AAGACTGGTG CTGAGAGGAA AGAAGCTGCT GAGAGCACTC TTGTTGCCTA 
    CAAGTCTGCT CAGGATATTG CTCTTGCTGA TCTGGCTCCC ACTCACCCAA 
    TCAGACTGGG GCTTGCTCTT AACTTCTCTG TTTTCTACTA TGAGATTCTC 
    AACTCATCTG ATCGTGCGTG TAGTCTCGCA AAGCAGGCTT TTGATGAGGC 
    AATCTCGGAG CTAGACACAT TGGGAGAGGA ATCATACAAG GACAGTACAT 
    TGATCATGCA GCTTCTCCGT GACAATCTCA CCCTCTGGAC TTCTGACCTC 
    AATGACGAAG CTGGTGATGA TATCAAGGAA GCCCCGAAAG AGGTGCAGAA 
    AGTTGATGAA CAAGCCCAAC CACCACCTTC GCAGTGATAA AATCAGATCC 
    ATGGAATGAT TTGCAGACAA AAAAATATAT GGCTTGGTTC TGTGTTTTTA 
    AACAGAAAAA AACCTTGTAG TTTCCTTAAA CATGGGCTGT AGTTTCCTTA 
    AACATGGATT TGTAGTAGTA ATTGTAGCTG CATGATTTGG TTATCGATGG 
    TTAAAACAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT5G16050.1 [+] show detail - general regulatory factor 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 14-3-3 protein 1.9e-205
    Gene3D 14-3-3 protein 3.2e-106
    Coil coiled-coil 0
    superfamily 14-3-3 protein 2.9e-105
    HMMPfam 14-3-3 protein 1.5e-112
    PatternScan 14-3-3 protein 0
    PatternScan 14-3-3 protein 0
    FPrintScan 14-3-3 protein 2.1e-88
    FPrintScan 14-3-3 protein 2.1e-88
    FPrintScan 14-3-3 protein 2.1e-88
    FPrintScan 14-3-3 protein 2.1e-88
    FPrintScan 14-3-3 protein 2.1e-88
    FPrintScan 14-3-3 protein 2.1e-88
    HMMPIR 14-3-3 protein 8.2e-177
    HMMSmart 14-3-3 protein 6.6e-209

    See the detailed result >

    AT5G16050.1

    Model type
    Protein coding
    Short Description
    general regulatory factor 5
    Curator Summary
    Encodes GF14 upsilon chain, a 14-3-3 gene family member.
    Computational Description
    general regulatory factor 5 (GRF5); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 7 (TAIR:AT3G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR