F09237

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09237

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09237

Determination of introduced cDNA(s)

  • RAFL09-33-O22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-O22 - Resource: pda06030

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-33-O22 - full reading 
    AACGAACAAA CCCTAGACCG TTAAAACCCT TATCAATTTC GCTGAAACGG 
    CAAATGGAAG AAGTGTCGTC GGAGATGGAA GTGGAGGTTC AAAATCGTCA 
    GCTTTCGGAT TCTTCTCCGG CTCAAAACGT GAAGAAATTT GGGCTCAAGA 
    ACTCTATTCA GACCAACTTC GGCTCTGACT ACGTCTTCCA GATTGTCCCA 
    AAAATCGATT GGACAGCAAT CGCGGTTTCC TTATCAACCA ACACCGTCAA 
    GCTTTACTCG CCGGTGACTG GTCAGTACTA CGGCGAATGT AAAGGCCACT 
    CCGATACCGT CAATCAGATT GCGTTTTCCT CCGACTCGGC GGCGTCTCCT 
    CACGTTTTGC ACTCTTGTTC CTCCGATGGT ACCATTAGAT CTTGGGACAC 
    TCGAAGTTTC CAACAGGTTT CGCGTATTGA TACTGGGAAT GATCAGGAGA 
    TTTTCAGCTT CTCCTATGGA GGTGCTGCAG ATAATCTTCT GGCTGGTGGA 
    TGCAAAGAGC AGGTTCTTTT GTGGGACTGG AGAAACTCAA AGCAAGTTGC 
    TTGTTTAGAG GAATCCCACA TGGACGACGT CACTCAGGTA CACTTTGTTC 
    CTAACAAGCC CAACAAGCTT CTTTCCGCTT CCGTGGATGG ATTGATATGT 
    CTTTTTAACA CTGAAGGTGA TATCAATGAC GATGATCATC TGGAATCTGT 
    CATCAACGTG GGAACTTCAA TTGGCAAAAT AGGTTTCCTC GGAGATGGCT 
    ATAAAAAGCT CTGGTGTCTC ACTCATATAG AAACTCTAAG TATTTGGAAT 
    TGGGAAGACG GAAGCTGTGA AGTCAACCTA GAGAAAGCTC GGGAACTCGC 
    ATCAGATAGT TGGACTCAAG ATAATGTTGA TTATTTTGTT GATTGTCATT 
    GTCCAGGAGG TGAAGATTTA TGGGTGATCG GTGGAACGTG CGCAGGAACC 
    GTTGGTTATT TTCCGGTGAA CTACAAACAG CCTGGATCAA TCGGTACCGC 
    TGAAGCTATT CTTGGTGGAG GTCACATAGA TGTAGTAAGG AGCGTTCTGC 
    AGATGCCAGG CGAGTATGGA GGAGCTGCAG GGTTATTTGG ATGGACTGGG 
    GGTGAAGATG GGCGACTATG TTGCTGGAAG TCGGATGAGG ATGCTACCGA 
    GATTAACCGG TCTTGGACTT CAAGTGAGTT GGTTGTTAAG CCGCCAAGGA 
    ACCGCAAGAA AAACAGACAC TCTCCTTACT AGTAAACAGA TACTACTTTT 
    TGGGTCTTGT GTCTTTTATA AAAGTTGAGA CTGAAGAGGA CAGTTTCCTT 
    TATGTCTCTT GTTCTTGTTA TTATTAAAAG GCAAAGTTGT TTAAATGAAA 
    TATTGAGG

    Gene models with high sequence identity

    1. AT2G47790.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 3.1e-31
    HMMPfam WD40 repeat, subgroup 4.8e-08
    HMMPfam WD40 repeat, subgroup 0.0015
    ProfileScan WD40 repeat 2 11.578
    ProfileScan WD40-repeat-containing domain 18.484
    Gene3D WD40/YVTN repeat-like-containing domain 1.2e-26
    HMMPanther UNCHARACTERIZED 3.4e-31
    HMMSmart WD40 repeat 1.3e-05
    HMMSmart WD40 repeat 27
    HMMSmart WD40 repeat 0.00011
    HMMSmart WD40 repeat 290

    See the detailed result >

    AT2G47790.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 11741 Blast hits to 7668 proteins in 457 species: Archae - 10; Bacteria - 2663; Metazoa - 3454; Fungi - 3073; Plants - 916; Viruses - 0; Other Eukaryotes - 1625 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR