F09242

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09242

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09242

Determination of introduced cDNA(s)

  • RAFL09-71-A03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-71-A03 - Resource: pda06747

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-71-A03 - full reading 
    CTGGGTCCTC CGCAATTTGA GAATCGGAGA TATCTCAAGT TTCGCAAAGT 
    CTCGTGGATT TGATCTTCGT CTCCTTGATC GATGGATTCA CCTTGAGCAA 
    TCGTTGATCG AGCTTCGAAG ATGTCGAATC ACTCCAGAGA TGAGCCTAGT 
    ACTGCCCCGA AGACAGATCA ATGGTATGAT CTTGTCCTTG GTTCCTCTGC 
    CAAAGATGAC TCCTCCCATA AATTCTGCAC TTTGCGATAT GAATTTAAGC 
    CGGCTTCAAT CGATAAGAAC AGGTCAGGAT CAATGCACAA GAAGAAGGAT 
    AACAGAGTTT CAGTTGAGTT TCAGAATAAC CAACCAGGTA AACCCAAGGT 
    GACATTTGAA GGTAGTAGTG AGGATTACAA AGAAAGCGAT GCGGTGTTGT 
    TTTTCGATGG GGAGAAGTTT CGTTTAGAGA GGTTGCATCG GGCTGTTACG 
    CAGCTGCGAC ATGTTAGGAC ACCTGGTGAA TCTGCTGCGG CTTCTCAATC 
    TGCGGTGCCT GTGGAGCATC GGTTATCTCC TGTTGGTCGT GCTGCTAAAT 
    CTCCACAAGT CAATAGAAGT TTGCTTCCTG ATGTGCCTGT TGAGGTGGAA 
    AGAATCGAAA TTGGGAAGCC AGAGAACTCA GCTGAACCTG CCAACACTGG 
    AAACGTGCCT GCAACCTCAC CAGTCGAGGA CAAGAACGAT GATGGAGATG 
    AGCATCAAGA GATCGATCTG GTTGAAATAT TTGGCTCATT TACACCAGAG 
    AACGACAATG CAGAGAAAGA GAACGCTGAT GGTGGAGAAT ATGTAGAAAG 
    CTTAAATAAA CAGCTTAGCA TGACGGAAGA AGAGATTGCA GATGTAGATG 
    ACGATAGCGG CGGTGAAGGA GAAAAAGGTC TTAACGCAGC AGAAGCACTT 
    AGAGCACAAG TGAACGCAGA GGTGCAAAAG AGTCAAACCT CAAGCTCAAG 
    CAGTAGCAGT GGAAGTAGCA GCGGAAGTGA CAGTGATGGT CGTAGCAAAA 
    GCGTAAGCAG CGGAAGTGGC AGCGGCGGCC AAAGCAGTAG TGGAAGCAGT 
    AGCCGTGGAA GTGGAGGAAG TGACGATGAA GATGAAGTCA ACTCCGTATA 
    ACAACCAGCT CCCAACAACT TTGTCAAACA ATATTTCCAT ATTTGAGACA 
    CTTTGTCTGA ATAATTTGGT TGAAGAATCC AAAAGGGTAA AAATTTATGT 
    TTTACTACGA AAGTAGTAAA TACAAATGAT ATAAAGATCC AGTTAC

    Gene models with high sequence identity

    1. AT1G71080.1 [+] show detail - RNA polymerase II transcription elongation factor
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Hypothetical protein F23N20.7 (At1g71 1.1e-258
    HMMPanther FAMILY NOT NAMED 1.1e-258
    HMMPfam EAF 3.2e-25
    Coil coiled-coil 0

    See the detailed result >

    AT1G71080.1

    Model type
    Protein coding
    Short Description
    RNA polymerase II transcription elongation factor
    Computational Description
    RNA polymerase II transcription elongation factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eaf, ELL-associated factor (InterPro:IPR019194); BEST Arabidopsis thaliana protein match is: RNA polymerase II transcription elongation factor (TAIR:AT5G38050.1); Has 12853 Blast hits to 3725 proteins in 482 species: Archae - 50; Bacteria - 7340; Metazoa - 2093; Fungi - 1002; Plants - 180; Viruses - 45; Other Eukaryotes - 2143 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR