F09249

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09249

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F09249

Determination of introduced cDNA(s)

  • RAFL02-05-J09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-05-J09 - Resource: pda00135

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-05-J09 - full reading 
    AGAAATTTTC TTCCGCCGTA AAAGCAAAAA AAGATGCAGA TCTTCGTGAA 
    AACCCTAACG GGGAAGACGA TCACTCTCGA GGTCGAGTCC TCTGACACCA 
    TCGACAATGT CAAGGCCAAG ATCCAAGACA AGGAAGGAAT CCCACCGGAC 
    CAGCAGCGAT TGATTTTCGC CGGAAAGCAG CTCGAAGACG GACGTACCTT 
    AGCCGATTAC AACATCCAGA AGGAATCAAC GCTTCACCTT GTCCTTCGTC 
    TCCGTGGAGG TGCTAAGAAG AGGAAGAAGA AGACCTACAC CAAGCCTAAG 
    AAGATCAAGC ACAAGCACAA GAAGGTCAAG CTCGCTGTTC TTCAGTTCTA 
    CAAGGTTGAT GGTTCAGGTA AGGTTCAGCG TTTGAGGAAG GAGTGCCCTA 
    ACGCAACCTG TGGTGCTGGG ACTTTCATGG CGAGTCATTT CGATCGTCAC 
    TACTGTGGTA AGTGTGGTCT CACCTACGTT TACCAGAAAG AAGGAGCTCA 
    GGAATGATTT TCATCTCGAT CTCTATCATT TTGAATTGAA TACTGCTTTT 
    TTTTTGGAAT TTGGAAGTTG TTTTTGGATG TTGTGGATCT TATGTTGAAC 
    TTGTTTGAAT TTCATATCTA GGTTTTTCTT ATGGATATTT TTATGCTCTT 
    TATTTGAATT ACTTTCAAAT CTTATTGC

    Gene models with high sequence identity

    1. AT2G47110.1 [+] show detail - ubiquitin 6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-like 5.7e-35
    Gene3D no description 1.1e-30
    HMMPfam Ubiquitin 2.1e-34
    HMMPfam Ribosomal protein S27a 7.8e-27
    Coil coiled-coil 0
    HMMSmart Ubiquitin 3e-35
    FPrintScan Ubiquitin subgroup 6.2e-39
    FPrintScan Ubiquitin subgroup 6.2e-39
    FPrintScan Ubiquitin subgroup 6.2e-39
    HMMPanther UBIQUITIN 7e-80
    HMMPanther UBIQUITIN 7e-80
    PatternScan Ubiquitin conserved site 0
    ProfileScan Ubiquitin supergroup 30.452

    See the detailed result >

    AT2G47110.1

    Model type
    Protein coding
    Short Description
    ubiquitin 6
    Curator Summary
    polyubiquitin gene
    Computational Description
    ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1); Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5539; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR