F09301

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	hyponastic (PATO:0002329) (Cauline leaf::Shape::hyponastic) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09301

Determination of introduced cDNA(s)

RAFL06-84-B20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-B20 - Resource: pda03869

full reading [+] show sequence

ATCTGTTGGG TCGTTTCTTT GAAATCAAAA AAAAAAAATC TCTGTTTCTC 
TGACACTCTC TCTCTCTGTT TCTACTTTCA AGATTCAAAT TTTTGTTCCC 
CTGATCCACT CGTCTTTGAA TTCTCATCAA GTCTTATATG TTTCTTGCCT 
ACTCTGATCT CTATCGGAAA CCCTAGATCC ATATCTTCTT GACTTGACAC 
TAGTTCACGA ATCACGATCT GCGGTTCCTG AAGCTGGTAA TGCTAGATCC 
CACCGAGAAA GTAATCGATT CAGAATCAAT GGAAAGCAAA CTCACATCAG 
TAGATGCGAT CGAAGAACAC AGCAGCAGTA GCAGTAATGA AGCTATCAGC 
AACGAGAAGA AGAGTTGTGC CATTTGTGGT ACCAGCAAAA CCCCTCTTTG 
GCGAGGCGGT CCTGCCGGTC CCAAGTCGCT TTGTAACGCA TGCGGGATCA 
GAAACAGAAA GAAAAGAAGA ACACTGATCT CAAATAGATC AGAAGATAAG 
AAGAAGAAGA GTCATAACAG AAACCCGAAG TTTGGTGACT CGTTGAAGCA 
GCGATTAATG GAATTGGGGA GAGAAGTGAT GATGCAGCGA TCAACGGCTG 
AGAATCAACG GCGGAATAAG CTTGGCGAAG AAGAGCAAGC CGCCGTGTTA 
CTCATGGCTC TCTCTTATGC TTCTTCCGTT TATGCTTAAC GAATTTTCTG 
GATCTTAAGT TTTAAGGTGA AATAATAATT AATTTTGTAG GATGTGTAAC 
GAATTAATGT GTAATTTTTG TATGCGTTTT TTTGGTGTTG TTTGAATTAA 
CTAAATTTTG AAATTTTTGT ATCTTGTTTA TGTGATCTCT GGTGAAGAAT 
GAATGAATGA ATGAAAGGTC AAAATGATTT TCTTCCGAAA AAAAAGAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

AT3G06740.1 [+] show detail - GATA transcription factor 15
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Glucocorticoid receptor-like (DNA-binding dom	1.1e-14
HMMSmart	Zinc finger, GATA-type	5.5e-14
HMMPfam	Zinc finger, GATA-type	2.3e-15
ProfileScan	Zinc finger, GATA-type	12.387
PatternScan	Zinc finger, GATA-type	0
HMMPanther	GATA TRANSCRIPTION FACTOR-RELATED	0.00037
HMMPanther	TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO	0.00037
Gene3D	Zinc finger, NHR/GATA-type	1.1e-05

See the detailed result >

AT3G06740.1

Model type: Protein coding
Short Description: GATA transcription factor 15
Curator Summary: Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description: GATA transcription factor 15 (GATA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 16 (TAIR:AT5G49300.1); Has 1479 Blast hits to 1431 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 586; Plants - 738; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link: InterPro Scan - TAIR