F09303

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09303

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09303

Determination of introduced cDNA(s)

  • RAFL09-14-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-B02 - Resource: pda05438

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-B02 - full reading 
    ACACACACAA CCACCAAACA CAAAGCTTTT CAAAACCCAG AGAAAATGTT 
    CATCGAGAGC TTCAAAGTAG AGAGTCCAAA TGTCAAATAC ACAGAGAATG 
    AGATCAATTC GGTGTACGAT TACGAAACAA CAGAGGTCGT CCACGAGAAT 
    CGTAACGGTA CATATCAATG GGTCGTGAAG CCAAAGACTG TCAAATACGA 
    TTTCAAAACA GACACTCGTG TCCCCAAATT AGGGGTTATG CTTGTTGGTT 
    GGGGAGGAAA CAATGGATCA ACACTAACCG CTGGTGTCAT TGCTAACAAA 
    GAAGGAATAT CGTGGGCGAC TAAAGACAAA GTGCAACAAG CTAATTACTT 
    TGGTTCACTT ACTCAAGCTT CATCGATTCG TGTTGGCTCT TACAATGGTG 
    AAGAGATCTA TGCTCCTTTC AAGAGTCTTC TTCCAATGGT GAATCCAGAG 
    GATGTTGTGT TTGGTGGTTG GGATATAAGT GACATGAATT TAGCAGACGC 
    TATGGCTAGA GCTAGAGTTC TTGATATTGA TCTGCAGAAA CAACTTAGAC 
    CTTACATGGA GAACATGATC CCACTTCCTG GTATCTATGA CCCTGATTTC 
    ATCGCTGCTA ATCAAGGTTC ACGTGCTAAT AGCGTGATCA AAGGTACCAA 
    GAAGGAACAA GTTGATCACA TCATCAAGGA CATGAGGGAG TTTAAGGAGA 
    AGAACAAAGT GGATAAGTTG GTTGTGTTAT GGACTGCAAA CACAGAGCGT 
    TATAGCAATG TGATTGTAGG ACTTAACGAT ACGACGGAGA ATCTATTGGC 
    TTCTGTTGAA AAGGACGAGT CTGAGATCTC GCCGTCTACG TTGTATGCGA 
    TTGCTTGTGT TCTTGAAGGC ATTCCTTTCA TCAATGGGAG TCCTCAGAAT 
    ACTTTTGTCC CCGGTCTTAT CGAATTGGCT ATATCGAAGA ATTGTTTGAT 
    TGGTGGGGAT GATTTCAAGA GTGGTCAGAC TAAGATGAAA TCCGTTTTGG 
    TTGATTTCCT TGTTGGAGCT GGCATTAAGC CTACTTCGAT TGTGAGCTAT 
    AATCATTTGG GAAACAACGA CGGGATGAAC CTCTCAGCGC CACAGACTTT 
    CCGCTCTAAG GAGATTTCAA AGAGCAATGT TGTAGACGAC ATGGTAGCTA 
    GTAATGGCAT CCTCTTTGAG CCTGGTGAAC ACCCTGACCA TGTCGTTGTC 
    ATCAAGTATG TGCCATATGT TGCGGATAGT AAAAGAGCAA TGGATGAGTA 
    CACGTCTGAG ATATTCATGG GAGGGAGGAA CACTATAGTG TTGCATAACA 
    CTTGTGAGGA CTCTCTCTTG GCTGCACCAA TTATCTTGGA TCTTGTCCTT 
    CTCGCTGAAC TCAGCACCAG AATCCAATTT AAAGCTGAAG GAGAGGGGAA 
    GTTTCACTCT TTCCACCCGG TAGCTACCAT ACTCAGTTAC CTCACAAAGG 
    CACCTCTTGT ACCGCCCGGA ACACCGGTGG TTAACGCTCT GTCGAAGCAG 
    CGGGCAATGC TGGAAAACAT TCTTAGGGCA TGTGTTGGGC TTGCGCCAGA 
    GAACAACATG ATCATGGAGT ACAAGTGAAG GATGAGGAAG AAGAAGTAAA 
    GGTACCTAAG ATGACCTTAG GATATGAAGG ACACTGCTCC ATTGTTTCAT 
    TTATATATAT CATTTTGTAT GTATATTATA TGAATGTGTG TGTGACGGAT 
    AATATGGATA AGCTTAGGGT TAACTTGTGT GATATGGATC TGGTCGGTTT 
    ATTTGGTGAG AAGATTAGCT AAGCTTTTGG ATCAAATGTG TAAAAGATTT 
    AAGTAATTAT GCTTGTGTCT CCTTGTAATA TAACCAAACT TATGATCTAT 
    GAATATGGAT TTTC

    Gene models with high sequence identity

    1. AT2G22240.1 [+] show detail - myo-inositol-1-phosphate synthase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 1.9e-84
    HMMPIR Myo-inositol-1-phosphate synthase 2.7e-281
    HMMPfam Myo-inositol-1-phosphate synthase 8.2e-118
    HMMPfam Myo-inositol-1-phosphate synthase, GAPDH-like 6.2e-46
    superfamily NAD(P)-binding domain 3.4e-167
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 1.1e-45
    HMMPanther Myo-inositol-1-phosphate synthase 0

    See the detailed result >

    AT2G22240.1

    Model type
    Protein coding
    Short Description
    myo-inositol-1-phosphate synthase 2
    Curator Summary
    ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocalization experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.
    Computational Description
    myo-inositol-1-phosphate synthase 2 (MIPS2); CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: myo-inositol-1-phosphate synthase 1 (TAIR:AT4G39800.1); Has 1859 Blast hits to 1855 proteins in 512 species: Archae - 101; Bacteria - 453; Metazoa - 126; Fungi - 158; Plants - 764; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR