F09430

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09430

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09430

Determination of introduced cDNA(s)

  • RAFL05-18-C17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-C17 - Resource: pda02752

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-C17 - full reading 
    GAGAGAGGAG AAGAGGAAGA GATGTTATCG TAGCCGTTGA TAATGGTCCC 
    AATAGCAAAC ACGCTTTTGA TTGGGCTCTT GTTCATTTCT GTCGTCTCGC 
    CGATACTCTC CATCTTGTCC ACGCCGTCTC AAGTGTTAAG AACGATGTTG 
    TGTATGAGAC GAGCCAAGCC CTCATGGAGA AACTTGCTGT TGAGGCGTAT 
    CAAGTTGCCA TGGTAAAGAG TGTGGCTCGT GTTGTTGAAG GCGATGCTGG 
    TAAAGTAATC TGCAAGGAAG CAGAGAAAGT GAAGCCTGCT GCTGTGATTG 
    TAGGCACACG AGGCAGGAGC TTAGTAAGAA GCGTGCTACA GGGGAGCGTA 
    AGCGAGTATT GTTTCCACAA TTGCAAATCT GCTCCTGTCA TAATCGTTCC 
    TGGAAAAGAA GCTGGAGACG AGTCGATCGT GGACTGGACA CGCTCAGAAG 
    ATCCTAAACC CTGAAGAAAA AGTTCAAGTG TTGTTTCCAC GAAGACTGTT 
    TTGTTTTTCA TCTTTCTGTC GCTACTGTTG CAGTCTTTGT TTCTGTATGT 
    CCCTAAAAAT CTTAGATTGC TTCTTCTTCG TCTCTCTGTG TGTGTATGTG 
    TTTTGATTTG GGTTTTTGTA GTTTCAAAAT TTCTGTATAA AACCTTTGCT 
    CAGGAATGAA TGTATTGTAT GC

    Gene models with high sequence identity

    1. AT2G21620.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Adenine nucleotide alpha hydrolases-like 1.1e-23
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 4.7e-19
    HMMPfam UspA 6.2e-25

    See the detailed result >

    AT2G21620.1

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Curator Summary
    Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.
    Computational Description
    RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 1069 Blast hits to 1068 proteins in 194 species: Archae - 66; Bacteria - 229; Metazoa - 119; Fungi - 58; Plants - 583; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR