F09438

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09438

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09438

Determination of introduced cDNA(s)

  • RAFL09-50-F07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-F07 - Resource: pda06447

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-F07 - full reading
    CCCAAATACA AAACTCCCGA AAATCTCTCT CTTTTATTCT TTCTTTCTTC 
    TTCTTCTTCC CCAACTTGAA AAAAAAAAGT AAACACGAAA ATGTCTCCGT
    CTTGGCTCCG CCCAACCGCC GATCACAATC ATCCTCCACC GCAACCGCCG
    TCGCAATCAC CGTCCCCTCT ATCTTCCGGT GATCCGAATC TCACAACATG
    TCTCTACCAA ACAGATCACG GCGTCTTCTA TCTAACATGG TCCCGAACTT
    TCTTAGGAGG CCACTCTGTG AATCTCTTCC TCCATTCACA AGATTACTAC
    AACCACTCTT CGCCACTCTC TTTCTCCTCC GCTGATCTCT CTCTTTCCTC
    CGCCGTCTCT TTCCATCTCA ACTTAAACAC ATTAGCTTTC TGGAAAAAAC
    GTGGATCCAG ATTCGTTTCT CCCAAAATCC AAGTCTTCTG GGACTTAAGC
    AAAGCCAAAT TCGACTCTGG ATCCGAACCT AGATCCGGAT TCTACATCGC
    TGTAGTTGTT GACGGAGAGA TGGGACTATT AGTCGGAGAT TCAGTCAAAG
    AAGCTTACGC TCGTGCTAAA TCGGCGAAAC CTCCGACGAA TCCGCAAGCT
    CTTCTGTTGA GGAAAGAGCA CGTGTTTGGA GCTAGGGTTT TCACAACGAA
    AGCGAGATTT GGAGGGAAGA ACAGAGAGAT TTCTATTGAT TGTCGTGTTG
    ATGAAGACGC TAAGCTCTGT TTTAGCGTTG ATTCGAAACA GGTTCTGCAG
    ATCAAGAGAC TTAGATGGAA ATTTAGAGGA AATGAGAAAG TTGAAATCGA
    TGGAGTTCAT GTTCAGATCT CTTGGGATGT ATACAATTGG TTGTTTCAGA
    GTAAAAGTTC CGGTGACGGC GGAGGAGGAG GAGGACACGC CGTGTTTATG
    TTTAGATTCG AGAGTGATCC AGAAGCAGAG GAGGTTTGTG AAACGAAGAG
    GAAAGAAGAA GAAGATGAGA AAAATCGAAA CGGTATCGTT TTATGGAAGC
    CGAAGAAGCA ATGTGGAAAT AGTTTTGGGA TTAAAGGGAT TGTTGAGTGG
    AGGAAGATGA GGAAGAGATT TGTTAAGAGT AAGAGAAGTT CTTCGTCGTC
    TTCGATTTCG ATGTCGTCGG CTTCTTCGGC GTGTAGCTCG TCGGTTATGG
    AATGGGCTAG TAGTGCTGAT GAGGCGGAGT ACGGCGGAGG AGGTTGTTCT
    GGTTCCGGTT CCGGCAATGG TCTTGGATTC TCATTACTGG TTTACGCTTG
    GATTAAGTGA AAATATTCTT TTTCGAGGGA AATAAGAAGT TACTGTTTTC
    GGTTAATTTT TTTTTTTAAT ATGTTCTTCT TTCTTTTTTA TATTAATTTT
    CCCTCTGAAA CC

    Gene models with high sequence identity

    1. AT5G11000.1 [+] show detail - Plant protein of unknown function (DUF868)
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    See the detailed result >

    AT5G11000.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF868)
    Computational Description
    Plant protein of unknown function (DUF868); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT2G25200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR