F09447

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09447

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09447

Determination of introduced cDNA(s)

  • RAFL05-19-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-L05 - Resource: pdz87531

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-19-L05 - 5 prime EST 
    GATCACTTTC TCTTGATCAC TCACTGCATC AACAATGGCC AGAGAGAAGA 
    TTGTGGTGGC CTGGTGGTAC CACAAAGAGC TGGAAACTAC TCTTGGGGCT 
    GAGAATATTT GCATTCATGG CTACTTTAGC TGCAGCCATT GTAATGTCAC 
    TAAACAAAGA GACAAAGACC TTGGTTGTGG CCACCATTGG TACTGTTCCT 
    ATTAAAGCCA CTTTAACCGC TAAGTTTCAG CACACACCGG CTTTTGTGTT 
    CTTTGTTATA GCTAATGTAA TGGTGAGCTT CCACAACTTG TTGATGATTG 
    NGGTTCANAT TTTCAGCCGG AAACTGGAGT ACAAAGGTCT TCGTCTCCTC 
    TCTATCGCCA TTCTTGACAT GCTAAACGCA ACACTAGTAT CTGCGGCTGC 
    AAACGCGGCG GTGTTCGTGG CAGAGCTAGG GAAGAACGGA AACAAGCACG 
    CCAAGTGGAA CAAAGTCTGC GACAGGTTCA CCACTTACTG TGATCACGGC 
    GCANGAGCAA TCATCGCAGC ATTCGCCGGA GTCATTCTAA TGCTCCTCGT 
    GTCCGCCGTC TCTATTT

    Gene models with high sequence identity

    1. AT4G20390.1 [+] show detail - Uncharacterised protein family (UPF0497)
      E-value: 0; Score: 99.29

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-19-L05 - 3 prime EST 
    GAATTTTTTT TTGTCATTTT AGAATTATAT AAAAAGATAA GAGAGAAATG 
    AAAACTTGAA TACAAATGTG AAAGTGATAG AACAAAGGAG TGCATTACAC 
    AATTTGCTAG TGACTTGAGA GACAAACACA CAAAGTAAGC CACAACATCT 
    ATAAAATGGT CACACACATG TTGCTGAATT TTTGGCCACG ATGTTTTAGA 
    CGACGGAGGT TGTGGTGGCG GTGGTGGGAG AAGTTTTTAG AATTGATTAA 
    GAGGCGGGAA ATAGAGACGG CGGACACGAG GAGCATTAGA ATGACTCCGG 
    CGAATGCTGC GATGATTGCT CCTGCGCCGT GATCACAGTA AGTGGTGAAC 
    CTGTCGCAGA CTTTGTTCCA CTTGGCGTGC TTGTTTCCGT TCTTCCCTAG 
    CTCTGCCACG AACACCGCCG CGTTTGCAGC CGCAGATACT AGTGTTGCGT 
    TTAGCATGTC AAGAATGGCG ATAGAGAGGA GACGAAGACC TTTGTACTCC 
    AGTTTCCGGC TGAAAATCTG AACCACAATC ATCAACAAGT TGTGGAAGCT 
    CACCATTACA TTAGCTATAA CAAAGAACAC AAAAGCCGGT GTGTGCTGAA 
    ACTTAGCGG

    Gene models with high sequence identity

    1. AT4G20390.1 [+] show detail - Uncharacterised protein family (UPF0497)
      E-value: 0; Score: 99.84

    AT4G20390.1

    Model type
    Protein coding
    Short Description
    Uncharacterised protein family (UPF0497)
    Computational Description
    Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G44550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR