F09508

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09508

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09508

Determination of introduced cDNA(s)

  • RAFL09-41-F06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-41-F06 - Resource: pda06254

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-41-F06 - full reading 
    ACAGCTGCAA CACTATCTTC TCAGAAATGG TAACCGAAGC TTTCGAATTC 
    GTCGCCGTTC CTTTCAATTC CGATGGCTGG GGACCTCCAG ACGCTTCCGA 
    CGTTTCCTCC TCCGCCTCTC CCACCAGCGT CGCCGCCGCT AATCTTCTCC 
    CGAACGTTCC TTTCGCTTCC TTCTCCCGTT CCGATAAGCT CGGCCGTGTA 
    GCTGATTGGA CTCGCAATCT CTCTAATCCA TCCGCTCGTC CTAACACCGG 
    ATCCAAATCA GATCCGTCTG CAGTTTTCGA TTTCTCCGCT TTCGCAATCG 
    ACGAAGGCTT CGGTCTCGCT TCCTCCGGTG GTAATCCCGA CGAAGACGCA 
    GCTTTCCGTC TCGTCGACGG TAAACCTCCG CCGCGTCCTA AATTCGGACC 
    TAAATGGCGT TTCAATCCTC ACCACAATCG GAATCAGCTT CCTCAACGGC 
    GAGATGAAGA AGTTGAAGCT AAGAAGCGTG ATGCTGAGAA GGAACGAGCT 
    CGTCGTGATC GTCTCTACAA TAACAACCGT AACAACATCC ATCACCAACG 
    CCGTGAAGCT GCCGCTTTCA AATCATCCGT TGATATTCAG CCGGAGTGGA 
    ACATGCTTGA GCAGATCCCT TTCTCAACAT TCTCGAAGCT CTCGTACACA 
    GTTCAAGAAC CAGAAGATCT TCTTCTCTGT GGTGGCCTTG AGTACTACAA 
    CCGCCTTTTC GATCGCATAA CGCCGAAAAA CGAACGCAGA CTCGAGCGTT 
    TCAAGAACAG GAACTTCTTC AAAGTCACTA CTAGTGATGA TCCTGTGATT 
    AGGCGTTTAG CTAAGGAAGA CAAAGCTACT GTTTTCGCTA CTGATGCTAT 
    ATTAGCTGCT CTTATGTGTG CTCCTAGATC TGTTTACTCT TGGGATATTA 
    TTATTCAACG TGTTGGTAAC AAACTGTTCT TTGACAAGAG AGATGGATCA 
    CAGCTTGATT TGTTGTCTGT GCATGAGACA TCTCAAGAGC CATTGCCTGA 
    GTCTAAAGAT GATATCAATT CTGCTCATTC TCTAGGTGTG GAAGCTGCTT 
    ACATCAATCA GAACTTTTCG CAGCAGGTTT TGGTTAGAGA TGGAAAGAAG 
    GAAACTTTTG ATGAAGCCAA TCCATTTGCT AATGAAGGTG AAGAGATTGC 
    TTCTGTTGCT TATAGGTATA GAAGGTGGAA GCTTGATGAT AATATGCATC 
    TTGTTGCGAG GTGTGAGTTA CAGAGTGTTG CTGATCTCAA CAACCAAAGG 
    TCGTTTCTTA CTTTGAATGC TCTTAACGAG TTTGATCCTA AGTACTCTGG 
    TGTTGATTGG AGACAGAAGC TTGAAACTCA GAGAGGTGCG GTTTTAGCTA 
    CAGAATTGAA GAACAATGGA AATAAGTTGG CTAAATGGAC TGCACAAGCT 
    TTATTGGCTA ATGCTGATAT GATGAAGATT GGTTTTGTCT CTAGGGTTCA 
    TCCTCGTGAT CATTTCAACC ATGTTATATT ATCTGTTTTG GGGTATAAGC 
    CGAAGGATTT CGCTGGACAG ATTAATCTCA ACACTTCTAA CATGTGGGGG 
    ATTGTGAAAT CCATAGTTGA TCTGTGTATG AAACTAAGCG AAGGGAAGTA 
    TGTTCTTGTG AAGGATCCAT CGAAGCCTCA AGTGAGGATT TATGAGGTTC 
    CACCTGATGC TTTCGAGAAT GATTACGTTG AGGAACCGTT GCCTGAAGAT 
    GAACAGGTTC AGCCAACTGA GGAAAACACA GAGGGAGCAG AAGCAAGTGT 
    AGCTGCAACT AAAGAAACCG AGGAGAAGAA AGCTGATGAT GCTCAAGCTT 
    GATGGTTATA AAGTCAGGTC CAAAGTCTAC ACCTTTCGTT TCTGGGTTCT 
    TTTGAGAGTT GAAGCTTCAA TCAAACAACA ACAATGGAGG TTCCTTTTTT 
    AATTATCTTG TCCTTTTTCA AATTTTTGTG GTACTGCTGT AATTTTAAGT 
    CAGAAATGAG ATTGTAGAAC ACTATCTTCG TGACATCTTT TGGAAAATCA 
    TTACGGATTG TTTACAGAAC AGAAATCTTT TTACTATTAA AAAAAAAAAA 
    AAAA

    Gene models with high sequence identity

    1. AT4G20980.1 [+] show detail - Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    ProfileScan Immunoglobulin-like 6.56
    HMMPIR Eukaryotic translation initiation factor 3, subunit 7 0
    HMMPanther Eukaryotic translation initiation factor 3, subunit 7 1.9e-292
    HMMPfam Eukaryotic translation initiation factor 3, subunit 7 4.4e-204

    See the detailed result >

    AT4G20980.1

    Model type
    Protein coding
    Short Description
    Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
    Computational Description
    Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (TAIR:AT5G44320.1); Has 517 Blast hits to 503 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 127; Plants - 75; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR