F09510

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few) epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic) abnormal (PATO:0000460) (Cauline leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09510

Determination of introduced cDNA(s)

RAFL06-78-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-78-C05 - Resource: pda03715

full reading [+] show sequence

AGCAGTCTTA TGGCGGCCAT AGTACTGATC AGATCTATCG TCAGAAACTT 
TAAACGGCCA GCCACCGCAG CCTCAGCCGC TTACTCGACA GGTGGTGGTG 
GCGGCGGTTG TACTTGTACG AGTAAAAAGC TAGAAGGCAA AGTAGCTCTC 
ATAACTGGTG GTGCTAGCGG GCTCGGTAAG GCCACGGCCA GCGAGTTTCT 
CCGCCATGGT GCCCGAGTCG TGATCGCCGA CTTAGACGCG GAAACCGGGA 
CAAAAACCGC TAAAGAACTA GGCTCGGAGG CAGAGTTTGT GCGGTGTGAT 
GTCACGGTGG AGGCTGATAT CGCTGGGACG GTGGAAATAA CGGTGGAGCG 
GTATGGGAAG CTAGACGTGA TGTACAATAA CGCTGGGATT GTTGGACCTA 
TGACTCCAGC GAGCATATCG CAGCTTGATA TGACAGAATT CGAGAGAGTA 
ATGAGGATTA ATGTTTTTGG TGTTGTCTCC GGCATCAAAC ACGCCGCTAA 
GTTTATGATT CCGGCTAGGT CTGGATGCAT TTTGTGCACA TCAAGCGTTG 
CAGGCGTGAC TGGAGGGTTG GCTCCACATT CATACACAAT CTCAAAGTTC 
ACAACTCCCG GAATAGTCAA GTCGGCAGCA AGCGAGCTCT GCGAACACGG 
CGTGCGTATA AACTGTATCT CACCGGGTAC GGTGGCTACA CCGCTCACTC 
TCAGTTACCT TCAGAAAGTG TTTCCGAAGG TATCGGAGGA GAAGCTACGC 
GAAACAGTGA AAGGAATGGG TGAGTTAAAA GGAGCTGAGT GTGAAGAAGC 
TGACGTGGCT AAGGCTGCTT TGTATTTGGC TTCCAACGAC GGTAAATACG 
TTACTGGCCA TAACTTGGTC GTGGATGGTG GCATGACTGC TTTCAAAATA 
GCTGGTTTTC CTTTTCCTTC GGATTCATGA TCAATCATTT TGTATCGTCT 
ATAAATAACT TTGTACTGTA TTCAAGATTT TATATCAAAG TTGGATCTT

Gene models with high sequence identity

AT3G26770.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 99.60

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	1.3e-69
FPrintScan	Glucose/ribitol dehydrogenase	1.7e-32
FPrintScan	Glucose/ribitol dehydrogenase	1.7e-32
FPrintScan	Glucose/ribitol dehydrogenase	1.7e-32
FPrintScan	Glucose/ribitol dehydrogenase	1.7e-32
FPrintScan	Glucose/ribitol dehydrogenase	1.7e-32
FPrintScan	Glucose/ribitol dehydrogenase	1.7e-32
FPrintScan	Short-chain dehydrogenase/reductase SDR	2.8e-05
FPrintScan	Short-chain dehydrogenase/reductase SDR	2.8e-05
FPrintScan	Short-chain dehydrogenase/reductase SDR	2.8e-05
HMMPanther	SHORT CHAIN ALCOHOL DEHYDROGENASE	5.7e-141
HMMPanther	Short-chain dehydrogenase/reductase SDR	5.7e-141
HMMPfam	Short-chain dehydrogenase/reductase SDR	2.1e-29
Gene3D	NAD(P)-binding domain	1.3e-64

See the detailed result >

AT3G26770.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26760.1); Has 124722 Blast hits to 124477 proteins in 3643 species: Archae - 1005; Bacteria - 80894; Metazoa - 6366; Fungi - 6864; Plants - 2737; Viruses - 9; Other Eukaryotes - 26847 (source: NCBI BLink).
Link: InterPro Scan - TAIR