F09510

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09510

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09510

Determination of introduced cDNA(s)

  • RAFL06-78-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-78-C05 - Resource: pda03715

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-78-C05 - full reading
    AGCAGTCTTA TGGCGGCCAT AGTACTGATC AGATCTATCG TCAGAAACTT 
    TAAACGGCCA GCCACCGCAG CCTCAGCCGC TTACTCGACA GGTGGTGGTG
    GCGGCGGTTG TACTTGTACG AGTAAAAAGC TAGAAGGCAA AGTAGCTCTC
    ATAACTGGTG GTGCTAGCGG GCTCGGTAAG GCCACGGCCA GCGAGTTTCT
    CCGCCATGGT GCCCGAGTCG TGATCGCCGA CTTAGACGCG GAAACCGGGA
    CAAAAACCGC TAAAGAACTA GGCTCGGAGG CAGAGTTTGT GCGGTGTGAT
    GTCACGGTGG AGGCTGATAT CGCTGGGACG GTGGAAATAA CGGTGGAGCG
    GTATGGGAAG CTAGACGTGA TGTACAATAA CGCTGGGATT GTTGGACCTA
    TGACTCCAGC GAGCATATCG CAGCTTGATA TGACAGAATT CGAGAGAGTA
    ATGAGGATTA ATGTTTTTGG TGTTGTCTCC GGCATCAAAC ACGCCGCTAA
    GTTTATGATT CCGGCTAGGT CTGGATGCAT TTTGTGCACA TCAAGCGTTG
    CAGGCGTGAC TGGAGGGTTG GCTCCACATT CATACACAAT CTCAAAGTTC
    ACAACTCCCG GAATAGTCAA GTCGGCAGCA AGCGAGCTCT GCGAACACGG
    CGTGCGTATA AACTGTATCT CACCGGGTAC GGTGGCTACA CCGCTCACTC
    TCAGTTACCT TCAGAAAGTG TTTCCGAAGG TATCGGAGGA GAAGCTACGC
    GAAACAGTGA AAGGAATGGG TGAGTTAAAA GGAGCTGAGT GTGAAGAAGC
    TGACGTGGCT AAGGCTGCTT TGTATTTGGC TTCCAACGAC GGTAAATACG
    TTACTGGCCA TAACTTGGTC GTGGATGGTG GCATGACTGC TTTCAAAATA
    GCTGGTTTTC CTTTTCCTTC GGATTCATGA TCAATCATTT TGTATCGTCT
    ATAAATAACT TTGTACTGTA TTCAAGATTT TATATCAAAG TTGGATCTT

    Gene models with high sequence identity

    1. AT3G26770.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 0; Score: 99.60

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 1.3e-69
    FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
    FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
    FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
    FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
    FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
    FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.000028
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.000028
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.000028
    HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 5.7e-141
    HMMPanther Short-chain dehydrogenase/reductase SDR 5.7e-141
    HMMPfam Short-chain dehydrogenase/reductase SDR 2.1e-29
    Gene3D NAD(P)-binding domain 1.3e-64

    See the detailed result >

    AT3G26770.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26760.1); Has 124722 Blast hits to 124477 proteins in 3643 species: Archae - 1005; Bacteria - 80894; Metazoa - 6366; Fungi - 6864; Plants - 2737; Viruses - 9; Other Eukaryotes - 26847 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR