F09535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	increased height (PATO:0000570) (Adult plant::Plant height::tall)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	root (PO:0009005)	present in greater numbers in organism (PATO:0000470) (Root::Number::many)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09535

Determination of introduced cDNA(s)

RAFL09-41-F04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-41-F04 - Resource: pda08329

full reading [+] show sequence

ATTAATCCAC TGAAACAATC ACTATTCATT CTCTTTCCTT AAGTGTCAAA 
CTCTTGAAAA AACTACTTTG AAGGAAAAAA TGTCTAAGAA GAAGAAAGGC 
AGCAACAACT TTAAGCTTCT CTGTTTCTTC CTGTTTTTGG GTGGTTTGGT 
TCAGACAGAT GCTTCTTTTG GAGTAGGAGG CGGCGTTGGA GTAGGAATCG 
GCGGCGGCGG CGGTGGCGGT GGCGGTGGTG TTTGGGTTGG CGGTGGATAC 
AACAACGGTG GAAATCGTAA TGCTGTTCCA GGATCATCAG CTCCAAACAG 
GGTAGCTTAC AATGCTCTTC AAGTTTGGAA ATCAGCCATG AGAGAGGATC 
CATCAAATGT TCTCAAAACA TGGGTTGGAT CAGATGTTTG TTCTTACAAA 
GGTGTGTTCT GTTCTGGTCA ATCTATAACC TCTATAGATC TTAACCATGC 
AAATCTCAAA GGCACACTTG TCAAAGACCT AGCTTTACTC TCAGACCTCA 
ATATTCTCCA TCTCAACAGT AACAGATTCT CAGGGCAAAT CCCAGATTCT 
TTCAAATCTT TAGCTTCTCT TCAAGAACTT GATCTAAGCA ACAATAAACT 
CTCAGGTCCT TTCCCTTTAG TCACACTCTA CATACCAAAT CTGGTTTACC 
TCGATCTCCG GTTTAATAGT TTAACCGGTT TCATCCCTGA AGAGCTTTTC 
AACAAACGGT TAGACGCGAT TCTCCTCAAT AACAATCAAT TCGTCGGAGA 
AATCCCAAGA AACCTCGGAA ATTCTCCGGC TTCGGTTATT AATCTCGCGA 
ATAACAGATT TTCCGGCGAA ATTCCGACGA GTTTTGGTCT GACGGGATCG 
AGGGTTAAGG AAGTTTTGCT TTTGAATAAC CAGTTAACCG GTTGTATACC 
GGAATCTGTT GGTATGTTCT CTGAAATTGA AGTCTTTGAC GTTAGCTACA 
ATGCATTGAT GGGTCATGTT CCAGATACGA TCTCTTGCTT GTCGGCGATT 
GAAATTTTGA ATCTTGCTCA CAATAAATTC TCTGGGGAGG TTCCTGATTT 
GGTTTGTTCG TTGAGGAATC TTATTAATCT CACTGTTGCG TTCAATTTCT 
TCTCTGGGTT TAGCTCTGAA TGTTCTTCCA GGGTTAGTTT CGGGTTTGAT 
TTCGTTGGGA ATTGTATTCC CGGGAGGAAT TCGCAGCGGC CGCAGCCGGA 
TTGTTCCGGT TATTCCGGCG GAGCTATGAG CTGTTTTAGG ATTCCGACGC 
AGCCTTTGGC TTGTGCTGCG ATAAGTGTTG GATTGAGAGA GAGTAATAAT 
CAATACTACA CTTCATCTCC TCCATGAAAG TTTCTAAAGT TAGAAGCTTT 
TTTTTATTAA TGGTTGATGC TGAATGATCT ATCTTTTTTG TAACTTATTA 
ATTAGTTGAT TAGTGACCAA ATTAAACGTT AATTCCTCTT CTGTGTAATC 
CAATCGTTGC TAATGTTGTT TTGTAAGCAG AAGAATTTTG TAAAAATCTA 
ACGTTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

AT4G29240.1 [+] show detail - Leucine-rich repeat (LRR) family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	L domain-like	4.9e-54
HMMPanther	LRR RECEPTOR-LIKE KINASE	5.6e-48
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	5.6e-48
HMMPfam	Leucine-rich repeat	0.36
HMMPfam	Leucine-rich repeat	0.067
HMMPfam	Leucine-rich repeat	0.052
HMMPfam	Leucine-rich repeat-containing N-terminal domain, type 2	0.00000068
Gene3D	no description	8.9e-54

See the detailed result >

AT4G29240.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G19780.1); Has 63461 Blast hits to 20951 proteins in 903 species: Archae - 14; Bacteria - 2781; Metazoa - 8815; Fungi - 480; Plants - 47912; Viruses - 34; Other Eukaryotes - 3425 (source: NCBI BLink).
Link: InterPro Scan - TAIR