F09538

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09538

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09538

Determination of introduced cDNA(s)

  • RAFL14-21-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-21-M11 - Resource: pda18335

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-21-M11 - full reading
    GTGTTTATCG TATGTTTCAC ACAGTACACG CTTCAGTGGG AGTTGTTGGG 
    TGATCGGTCC GAGGCGACAT ACAAGATGAC CGGAAACTCT TTTAACTCGA
    TGAAAGATTT CCTGAAGCAG ACAGGCGGCT ATGCGGTAAT AGACGGAGGG
    CTTGCAACGG AGTTCGAGAG ACATGGAGCA GATCTCAACG ATCCTCTCTG
    GAGCGCCAAA TGCCTTGTCA CCTCTCCTCA CCTCATTCAC ACCGTGCATC
    TCGATTACCT TGAAGCTGGT GCTGATATCA TCTCCAGCGC TTCTTATCAG
    GCCACGATTC AGGGGTTTGA AGCAAAGGGA TTTTCTAGAG AAGAGAGCGA
    ATCTTTGCTT AAAAAGAGCG TAGAAATAGC GACTGAAGCT CGGAACTCGT
    ATTATGACAA ATGCGGAACT AGCTCTTCCA TGGATGATAA GATTCTCAAA
    AAGCGCCCTA TATTAGTTGC AGCATCAGTT GGTAGCTACG GTGCATACTT
    GGCTGATGGG TCTGAATACA GTGGAATCTA TGGTGATTCG ATCACGCTGG
    AAAAGCTGAA GGATTTTCAC CGCAGACGAC TCCAAGTTCT GGCGGAATCT
    GGTGCTGATT TAATAGCATT TGAGACCATT CCAAACAAGA TAGAGGCTCA
    GGCATTTGCT GATCTATTAG AAGAGGGAGA TGTGAAGATT CCTGGGTGGT
    TTTCATTCAA CTCAAAGGAT GGCGTAAACG TGGTTAGCGG GGATTCCATC
    AAGGAGTGTA TCTCCATAGC TGAAAATTGT GAGAAAGTAG TGGCGGTTGG
    AATCAACTGT ACCCCTCCAA GATTCATAGA GGGGCTAGTT TTGGAGATAG
    AAAAGGTGAC AAGCAAGCCC ATACTAGTGT ACCCAAACAG CGGAGAAAGC
    TATGATGCTG ATCGGAAGGA GTGGGTGGAA AACACCGGAG TTGGGGATGA
    AGACTTTGTA TCATACGTAG AGAAATGGAT GGATGCAGGA GTGTCTCTCC
    TGGGAGGTTG CTGCCGCACA ACACCAACCA CCATCAGAGC CATCCACAAG
    AGACTCGTCA ACCGCAGATC TCTTTAGCAT TCAACTTCAC TCTCTTCTAT
    GAATCTCTAG AACCTTGGCA ATAGATTTCT ACCAAAAACA TGAATGTTTG
    TCTTCCCTTT GCCAATTACA AATCTAATTT CAAGGAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G63250.1 [+] show detail - homocysteine methyltransferase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homocysteine S-methyltransferase 49.193
    HMMPanther HOMOCYSTEINE S-METHYLTRANSFERASE 3.7e-43
    HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 3.7e-43
    HMMPfam Homocysteine S-methyltransferase 3.8e-88
    superfamily Homocysteine S-methyltransferase 4.8e-86
    Gene3D Homocysteine S-methyltransferase 9.2e-79

    See the detailed result >

    AT3G63250.1

    Model type
    Protein coding
    Short Description
    homocysteine methyltransferase 2
    Curator Summary
    Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
    Computational Description
    homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR