F09549

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09549

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09549

Determination of introduced cDNA(s)

  • RAFL06-69-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-D11 - Resource: pda03321

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-D11 - full reading 
    AAACCACAAG AAAGAAAGTA AACATAAAAG TATGGGAAGG TCACCGTGCT 
    GTGAGAAAGC TCACACAAAC AAAGGAGCAT GGACGAAAGA AGAGGACGAG 
    AGGCTCGTCG CCTACATTAA AGCTCATGGA GAAGGCTGCT GGAGATCTCT 
    CCCCAAAGCC GCCGGACTTC TTCGCTGTGG CAAGAGCTGC CGTCTCCGGT 
    GGATCAACTA TCTCCGGCCT GACCTTAAGC GTGGAAACTT CACCGAGGAA 
    GAAGACGAAC TCATCATCAA GCTCCATAGC CTTCTTGGCA ACAAATGGTC 
    GCTTATTGCC GGGAGATTAC CGGGAAGAAC AGATAACGAG ATAAAGAACT 
    ATTGGAACAC GCATATACGA AGAAAGCTTA TAAACAGAGG GATTGATCCA 
    ACGAGTCATA GACCAATCCA AGAATCATCA GCTTCTCAAG ATTCTAAACC 
    TACACAACTA GAACCAGTTA CGAGTAATAC CATTAATATC TCATTCACTT 
    CTGCTCCAAA GGTCGAAACG TTCCATGAAA GTATAAGCTT TCCGGGAAAA 
    TCAGAGAAAA TCTCAATGCT TACGTTCAAA GAAGAAAAAG ATGAGTGCCC 
    AGTTCAAGAA AAGTTCCCAG ATTTGAATCT TGAGCTCAGA ATCAGTCTTC 
    CTGATGATGT TGATCGTCTT CAAGGGCATG GAAAGTCAAC AACGCCACGT 
    TGTTTCAAGT GCAGCTTAGG GATGATAAAC GGCATGGAGT GCAGATGCGG 
    AAGAATGAGA TGCGATGTAG TCGGAGGTAG CAGCAAGGGG AGTGACATGA 
    GCAATGGATT TGATTTTTTA GGGTTGGCAA AGAAAGAGAC CACTTCTCTT 
    TTGGGCTTTC GAAGCTTGGA GATGAAATAA TATTGTCAAA TTTTAGGCGT 
    AACTGTACAA AACTTTTGCC TAGATAATTT GAAAGTATAT CTTCAACTTG 
    TATGAGAAAT TTAACTGGTG AATTATAATA TATAGAATTT GTTTTAAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT4G38620.1 [+] show detail - myb domain protein 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Myb, DNA-binding 3e-15
    HMMPfam Myb, DNA-binding 1.8e-16
    superfamily Homeodomain-like 2.3e-23
    superfamily Homeodomain-like 1.3e-13
    Gene3D Homeodomain-related 4e-15
    Gene3D Homeodomain-related 1.9e-18
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 29.411
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 17.051
    HMMSmart SANT, DNA-binding 8.5e-14
    HMMSmart SANT, DNA-binding 6.3e-18
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 4.3e-101
    HMMPanther Myb transcription factor 4.3e-101

    See the detailed result >

    AT4G38620.1

    Model type
    Protein coding
    Short Description
    myb domain protein 4
    Curator Summary
    Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.
    Computational Description
    myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR