F09604

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09604

Determination of introduced cDNA(s)

  • RAFL09-15-G07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-G07 - Resource: pda17646

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-15-G07 - full reading 
    TTTGCCTCAA AAGATGCAGA TCTTCGTGAA AACCCTAACG GGGAAGACCA 
    TAACCCTTGA GGTTGAATCA TCCGACACCA TCGACAATGT GAAGGCGAAG 
    ATCCAAGACA AGGAAGGAAT CCCACCGGAC CAGCAGCGAT TGATTTTCGC 
    CGGGAAACAG CTTGAAGACG GCCGTACCCT CGCCGACTAC AACATCCAGA 
    AGGAATCGAC GCTTCATCTC GTCCTCCGTC TCCGTGGTGG TGCTAAGAAG 
    AGGAAGAAGA AGACTTACAC CAAGCCGAAG AAGATCAAGC ACAAGCATAA 
    GAAGGTTAAG CTCGCTGTTC TTCAGTTTTA CAAAATCGAT GGATCTGGAA 
    AGGTTCAGCG TTTGAGGAAG GAGTGCCCTA ACGCAACCTG TGGAGCTGGG 
    ACTTTCATGG CGAGTCATTT TGATCGCCAT TACTGTGGTA AGTGTGGACT 
    CACCTACGTT TACCAGAAAG AAGGAGTTGA AGCTTGATCT GTTGTAGCGG 
    TAGATCGATC CTTCTCTTTC TCTCTTATCT TTTAAAAACT GCATTTCTAT 
    TTGGGAATTT TGTAAGCTCT TTAATTTGAG TTATCATGGA TTCTATGTTG 
    AACATCTTTC GTTCTGGATT ATAAATTATG GAAGGTTTTA GTAAAAAAAA 
    AA

    Gene models with high sequence identity

    1. AT3G62250.1 [+] show detail - ubiquitin 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ubiquitin 3e-35
    Gene3D no description 1.1e-30
    PatternScan Ubiquitin conserved site 0
    FPrintScan Ubiquitin subgroup 6.2e-39
    FPrintScan Ubiquitin subgroup 6.2e-39
    FPrintScan Ubiquitin subgroup 6.2e-39
    HMMPanther UBIQUITIN 1.5e-79
    HMMPanther UBIQUITIN 1.5e-79
    superfamily Ubiquitin-like 5.7e-35
    ProfileScan Ubiquitin supergroup 30.452
    HMMPfam Ubiquitin 2.1e-34
    HMMPfam Ribosomal protein S27a 1.1e-26

    See the detailed result >

    AT3G62250.1

    Model type
    Protein coding
    Short Description
    ubiquitin 5
    Computational Description
    ubiquitin 5 (UBQ5); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12703 Blast hits to 7391 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5541; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR