F09609

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09609

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09609

Determination of introduced cDNA(s)

  • RAFL02-08-F07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-08-F07 - Resource: pda00169

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-08-F07 - full reading 
    AGAAGAAGAC ATGACAAGTG AAGTTCTTCA AACAATCTCA AGTGGATCAG 
    GTTTTGCTCA GCCACAGAGC TCATCAACCC TGGATCATGA TGAATCTCTC 
    ATCAATCCTC CTCTTGTTAA GAAAAAGAGA AATCTCCCTG GAAATCCTGA 
    TCCGGAAGCT GAAGTGATAG CTTTATCCCC CACGACCTTG ATGGCTACGA 
    ACCGGTTCCT ATGTGAGGTA TGTGGCAAAG GTTTCCAAAG AGACCAAAAC 
    TTACAGCTTC ATCGGCGAGG ACATAATCTT CCATGGAAGT TGAAGCAGAG 
    GACAAGCAAA GAAGTGAGAA AACGTGTCTA CGTTTGCCCC GAGAAGACAT 
    GTGTCCACCA TCACTCCTCT AGAGCTCTAG GCGATCTCAC TGGAATCAAA 
    AAGCATTTTT GCCGGAAACA CGGGGAGAAG AAGTGGACGT GCGAGAAATG 
    TGCTAAGAGA TACGCAGTCC AATCTGATTG GAAAGCTCAT TCCAAGACTT 
    GTGGTACTAG AGAGTACCGT TGCGATTGTG GCACCATTTT CTCAAGGCGA 
    GACAGCTTTA TCACTCATAG AGCTTTCTGC GATGCCTTAG CGGAAGAAAC 
    CGCTAAGATA AACGCAGTGT CTCATCTCAA CGGTTTAGCC GCGGCTGGAG 
    CCCCAGGATC AGTTAATCTC AACTATCAAT ATCTCATGGG AACATTCATC 
    CCACCGCTTC AACCATTTGT ACCACAACCG CAAACAAATC CAAACCATCA 
    TCATCAACAT TTTCAGCCAC CAACTTCTTC GTCGCTCTCT CTATGGATGG 
    GACAAGATAT CGCGCCGCCT CAACCGCAAC CGGACTACGA TTGGGTTTTT 
    GGAAACGCTA AGGCAGCGTC TGCTTGCATT GATAATAATA ATACTCACGA 
    TGAGCAGATT ACGCAAAACG CAAACGCAAG TTTGACCACT ACCACTACTC 
    TCTCTGCCCC TTCTTTATTC AGCAGCGACC AACCACAAAA CGCAAACGCA 
    AATTCAAACG TGAATATGTC CGCGACAGCT TTACTACAGA AAGCTGCTGA 
    AATTGGCGCT ACTTCTACAA CAACCGCAGC GACCAATGAC CCATCAACGT 
    TTCTTCAAAG TTTCCCGCTT AAATCCACCG ATCAAACCAC CAGTTATGAC 
    AGTGGCGAAA AGTTTTTTGC TTTGTTCGGG TCTAACAACA ACATTGGGTT 
    AATGAGTCGT AGTCATGATC ATCAAGAGAT CGAGAACGCT AGAAATGACG 
    TTACGGTTGC GTCTGCCTTG GATGAATTAC AGAATTACCC TTGGAAACGT 
    AGAAGAGTTG ATGGTGGAGG TGAAGTGGGT GGAGGAGGGC AAACTCGGGA 
    TTTCCTCGGG GTTGGTGTAC AAACGTTGTG CCATCCATCG TCTATCAATG 
    GATGGATTTG AAAGAGTTTA AAAATTTCGG GGTTAATGCA TAAATTACGT 
    AAAAGAAGAA GGAATCTTTT GTCATTTCCA CCATTTTCTA AGATAACATA 
    TGTATATGGT AATGGAAGTT GTTTTCTTTT ATT

    Gene models with high sequence identity

    1. AT5G44160.1 [+] show detail - C2H2-like zinc finger protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily C2H2 and C2HC zinc fingers 5.1e-05
    superfamily C2H2 and C2HC zinc fingers 0.00015
    ProfileScan Zinc finger, C2H2-type 11.51
    HMMPanther UNCHARACTERIZED 1.7e-10
    HMMPanther SERINE/THREONINE-PROTEIN KINASE RIO 1.7e-10
    PatternScan Zinc finger, C2H2-type 0

    See the detailed result >

    AT5G44160.1

    Model type
    Protein coding
    Short Description
    C2H2-like zinc finger protein
    Computational Description
    nutcracker (NUC); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: primary root apical meristem, stem vascular system, embryo, root, embryonic root; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G03840.1); Has 52823 Blast hits to 19358 proteins in 362 species: Archae - 0; Bacteria - 0; Metazoa - 50211; Fungi - 300; Plants - 764; Viruses - 0; Other Eukaryotes - 1548 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR