F09611

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09611

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09611

Determination of introduced cDNA(s)

  • RAFL05-16-C09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-C09 - Resource: pda02668

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-C09 - full reading 
    ACAAACACTA GAAACCACAA AGACAAAATC AAGGTCTTAA ACAATGAGAT 
    CCCATCTCTT GATTTTGTTA ATCTCTCTCT TAATCTTGAA ATCTGAATCC 
    ATAAACTGCA ATGAAAAGAG CCATTCCTCA GATCTAAGAG TGTTCCACAT 
    TAACAGTCTA TGTTCTCCAT TCAAAACTTC TGTTTCATGG GCAGATACAC 
    TTCTTCAAGA TAAGGCTCGT TTCCTATACT TGTCAAGCCT CGCTGGCGTT 
    AGGAAATCAT CAGTTCCAAT CGCCTCTGGT CGGGCCATCG TTCAGAGCCC 
    GACTTACATC GTGAGGGCTA ACATCGGGAC ACCGGCTCAG CCCATGCTCG 
    TGGCTCTTGA CACTAGCAAT GACGCTGCTT GGATTCCTTG TTCTGGCTGC 
    GTTGGCTGTT CTTCCTCTGT TCTCTTTGAC CCTTCCAAGT CAAGCTCCTC 
    TCGTACTCTT CAATGCGAAG CTCCTCAGTG TAAACAGGCT CCAAATCCAA 
    GTTGCACAGT AAGCAAATCA TGTGGTTTCA ACATGACCTA CGGTGGTTCA 
    ACCATCGAAG CATATCTGAC ACAAGACACA CTAACATTGG CCAGTGACGT 
    CATCCCAAAC TACACCTTTG GGTGCATCAA CAAAGCTAGT GGAACATCGT 
    TGCCAGCGCA AGGACTCATG GGCTTAGGTC GTGGTCCATT GTCTTTAATC 
    TCACAGTCAC AAAATCTTTA TCAGTCTACA TTCTCGTATT GCTTGCCTAA 
    TAGTAAGTCC AGCAATTTCT CCGGATCACT AAGATTGGGA CCTAAGAACC 
    AACCGATCCG GATCAAGACC ACTCCATTGT TAAAGAACCC TAGAAGATCA 
    TCGCTTTACT ATGTTAACTT GGTTGGGATT CGTGTCGGAA ACAAAATTGT 
    GGATATTCCT ACAAGTGCAC TCGCCTTTGA TCCGGCCACC GGAGCCGGCA 
    CCATCTTTGA CTCGGGGACG GTCTACACAA GGCTAGTCGA ACCAGCTTAC 
    GTGGCGGTGA GAAACGAGTT CAGGAGACGT GTTAAGAACG CAAACGCAAC 
    TTCACTAGGA GGTTTCGACA CATGCTACTC CGGCTCCGTC GTGTTCCCGT 
    CGGTGACGTT TATGTTCGCC GGAATGAACG TGACTCTGCC TCCAGACAAC 
    CTTCTCATCC ACAGCTCCGC AGGTAACCTC AGCTGCCTCG CCATGGCTGC 
    AGCTCCGGTC AACGTTAACT CTGTCCTTAA CGTCATCGCT AGTATGCAGC 
    AACAGAACCA CCGAGTTCTC ATCGACGTTC CAAATTCCAG GCTCGGAATT 
    TCCCGTGAAA CTTGCACCTA AGTTTTATCG ATTTGTATTT TTGTTTTCGG 
    TCGATTTCGT AATGCGTTTT GAACTTTTGA ATTTTGGAAA CTATATAAGT 
    TAATGATTTT TGTTAATTCT CAG

    Gene models with high sequence identity

    1. AT3G54400.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 2.3e-115
    HMMPanther Peptidase A1 2.3e-115
    Gene3D Peptidase aspartic, catalytic 5.1e-38
    superfamily Peptidase aspartic 1.5e-83
    HMMPfam Peptidase A1 1.4e-17

    See the detailed result >

    AT3G54400.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G07030.1); Has 3653 Blast hits to 3640 proteins in 325 species: Archae - 0; Bacteria - 0; Metazoa - 1052; Fungi - 421; Plants - 1910; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR