F09618

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09618

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09618

Determination of introduced cDNA(s)

  • RAFL05-16-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-H09 - Resource: pda07354

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-H09 - full reading 
    AACCTAAGAA TCTTCTTGAT ATCACTCAGA AAGAAAAAAA ACAATAAAAA 
    CAATAAAATC TCAAACGCGG TTTCTACGAT TTTTGTAGAG TCAAAACCAG 
    CAATGGTGTT GGTGAGAGTC TAAAAAAAAT CGATCGAAAG CTCAAAAACT 
    CCATCTTCTT TCCCCCAGGA ACTCACAAAC CCTAGATGAA TTGTTAATCA 
    TCAATCATCG ATTTCAAGAT TTAGTCTCGA AAGGTTTTAT TTTTTTTTGT 
    GCTTGCGTCT TAAATGGAGA ATCGTAAAGG AGGAAACTTT AGCGTACCTA 
    GCTCCGAAGC TTTGACCACG ACGCTTCGTA ATGCGATCCA AGCTTTGGGT 
    CGTGGTTTCG ATGTTACATC TGATGTTCGG CTTCTTTATT GCAAAGGAGC 
    TCCTGGGTCA AGACTTGTTC GTATAGAAGA AGGACAAAAC AGAGATCTTG 
    AGTTGTCTCA TGGGTTTCTT CTTCCTAATG TCCCTGCTGA TATTGACTGT 
    TCACGCGGCA ACAGTGGCAC ACAAAGAATC TCTGTTTGCA GCTTCCATGA 
    GATGGCAGAA GAATTCAATG TGAGATCAGG TGTAAAAGGG AACATACCAC 
    TCGGATGCTT TAACGCAATG TTCAATTACA CGGGTTCTTG GCAAGTAGAT 
    GCAGCATCCA CTAAATCTCT TGCACTGGTT GGATATTTTA TCCCGCTTTA 
    TGATGTCAAA TTAGCAAAGC TTACATTGGT TTTGCACAAT GAGATCAGAC 
    GTGCTGTTCC TTCCTCGTGG GATCCTGCTT CCCTAGCTAG CTTTATTGAA 
    AATTACGGCA CTCATATTGT AACTTCGGTG ACCATTGGTG GAAGAGATGT 
    AGTATACATC AGACAACATC AGTCTTCTCC TTTACCAGTA TCTGAAATAG 
    AAAACTATGT GAATGACATG ATAAAGCACA GATTTCATGA AGCAGAGAGT 
    CAATCTATTA CCGGCCCCTT GAAATACAAA GACAAGGATA TCACAGTAAT 
    ATTTAGGCGA AGAGGAGGCG ACGATCTTGA GCAAAGCCAT GCTCGTTGGG 
    CTGAGACTGT ACCCGCAGCT CCAGACATTA TCAACATGAC TTTTACTCCT 
    ATTGTTTCTC TCCTTGAAGG TGTGCCTGGT TTACGGCATT TGACTCGTGC 
    TATCGAACTT TACTTGGAAT ATAAGCCTCC TATTGAAGAT TTACAATACT 
    TCTTGGATTA CCAAATAGCT CGAGCTTGGG CTCCCGAACA GAGTAACCTC 
    CAACGTAAAG AACCTGTGTG TTCTTCTCTT CAATTCAGCT TAATGGGTCC 
    CAAACTATTC ATCAGCGCTG ATCAGGTAAC TGTTGGGCGT AAGCCGGTCA 
    CAGGTCTCAG ACTGAGCTTA GAAGGAAGCA AACAAAACCG TCTCTCTATC 
    CATTTACAAC ACTTAGTCTC TCTCCCTAAA ATCCTGCAGC CACATTGGGA 
    CTCTCACGTG CCAATAGGTG CACCGAAATG GCAAGGACCA GAGGAGCAAG 
    ATAGCCGCTG GTTCGAGCCA ATCAAATGGA AGAACTTCTC TCACGTAAGC 
    ACCTCACCTA TCGAACACAC AGAGACCCAC ATCGGCGATC TCTCCGGCGT 
    TCACATTGTC ACTGGAGCTC AGCTCGGGGT TTGGGATTTC GGATCAAAAA 
    ACGTTTTGCA TTTGAAACTA CTCTTCTCTA AAGTCCCCGG TTGTACAATA 
    AGAAGGTCCG TCTGGGACCA CACTCCCGTT GCTTCCTCAG GGAGACTGGA 
    ACCGGGAGGT CCATCTACAT CAAGTTCGAC CGAGGAAGTG TCAGGGCAAT 
    CAGGAAAACT GGCCAAGATT GTGGATTCGT CAGAGATGTT AAAAGGACCA 
    CAGGATTTAC CTGGACATTG GCTTGTCACT GGAGCAAAGC TAGGCGTTGA 
    AAAGGGTAAG ATTGTATTGC GTGTGAAGTA TTCGTTGCTA AATTATTGAG 
    AGATTTTAGA TGAGTTCTTG TTTTTCCGGC GGCCGGGAAA GTTTTCCGTC 
    AGCATTCTTT GCACAGCGAA TCATTCTTGT ACATGTTTCG GTTGCTTATG 
    GGAACCGTTT GGTTCTGTTC GGTTTGACAC GAGTTTGGTT TGGTTGATTT 
    TTAATTTTGG TCCGGTTTGG TTTTGTAGAC GATTTTATTA AATCAGAGCT 
    GTAAATTTGT AGTGGGATAT TCAGC

    Gene models with high sequence identity

    1. AT1G29690.1 [+] show detail - MAC/Perforin domain-containing protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Membrane attack complex component/perforin (MACPF) domain 5.80000000000004e-24
    ProfileScan Membrane attack complex component/perforin (MACPF) domain 0

    See the detailed result >

    AT1G29690.1

    Model type
    Protein coding
    Short Description
    MAC/Perforin domain-containing protein
    Curator Summary
    Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.
    Computational Description
    constitutively activated cell death 1 (CAD1); CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 226 Blast hits to 225 proteins in 30 species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR