F09623

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09623

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09623

Determination of introduced cDNA(s)

  • RAFL02-07-L07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-07-L07 - Resource: pda02247

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-07-L07 - full reading 
    CTCTTCTCTT TTGTATACAA AAACCCTAGT CGACGGCGCT GTTACACCGT 
    CGTCCAGATT TTTCAAACGC CGACGAAGCT GATTTAGTGA ATATGGAATC 
    TAATGGATCA GTTTCATCGA TGGTTAACTT GGAGAAGTTT CTCTGTGAGC 
    GATTGGTGGA CCAGTCACAA CCAATCTCGG AGCGATTTAG AGCTCTCTTC 
    TCTCTTCGCA ACTTGAAAGG CCCAGGACCT CGCAACGCTC TAATCCTTGC 
    ATCCAGAGAC TCATCTAATT TGTTAGCACA TGAAGCTGCA TTTGCATTGG 
    GTCAGATGCA AGATGCTGAA GCCATTCCTG CTCTTGAGTC GGTTCTTAAT 
    GATATGTCTT TGCATCCAAT AGTACGACAT GAGGCAGCAG AAGCCCTTGG 
    AGCTATTGGT TTGGCGGGTA ATGTTAACAT TTTAAAGAAA AGCTTGAGCT 
    CGGATCCAGC TCAGGAGGTT CGGGAAACAT GTGAATTAGC TCTCAAAAGG 
    ATTGAAGACA TGAGTAACGT TGATGCCGAG AACCAGTCAT CAACGACAGA 
    GAAATCACCT TTCATGTCTG TTGACCCAGC AGGCCCAGCT GCGTCTTTCT 
    CTTCTGTTCA CCAACTCAGG CAAGTTCTCC TGGATGAAAC AAAAGGCATG 
    TATGAGAGAT ATGCTGCACT GTTCGCTCTA AGGAATCATG GTGGAGAGGA 
    AGCTGTTTCT GCCATAGTTG ATTCTTTGAG TGCTAGTAGT GCCCTTCTAC 
    GTCACGAGGT TGCTTATGTC TTGGGTCAGT TGCAAAGTAA AACTGCTTTA 
    GCTACTCTAA GCAAAGTACT TAGAGATGTG AATGAGCACC CAATGGTTAG 
    ACATGAGGCT GCAGAAGCGC TTGGTTCTAT TGCTGATGAA CAGAGCATTG 
    CTTTGCTAGA AGAATTCTCA AAGGACCCTG AGCCAATTGT TGCACAAAGC 
    TGTGAAGTAG CATTGAGTAT GTTGGAATTT GAAAATTCCG GGAAATCGTT 
    TGAGTTTTTT TTCACGCAAG ACCCGCTTGT TCACTAAGAA TCTCAATCAT 
    TCTTCGTCAA ACATTTACCG ACAAAGGAAA GCAAACATTT TATACAGAGA 
    GAGAAGAAAC TGCTACTTTA ACATGTCTTT ATGTACGATT ATAAATAACT 
    CTATTCATAT GTTTAAGGTT AAGATTACAT TGTCTTATGG TACGGAAGCT 
    TTTCATTGTT GAAGAAAGAG AATCCTTTGT GTTTT

    Gene models with high sequence identity

    1. AT3G58180.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam PBS lyase HEAT-like repeat 1.5e-05
    HMMPfam PBS lyase HEAT-like repeat 0.014
    HMMPfam PBS lyase HEAT-like repeat 5.7e-05
    superfamily Armadillo-type fold 3.3e-42
    Gene3D Armadillo-like helical 5.3e-10
    Gene3D Armadillo-like helical 7.6e-14
    HMMPanther PBS LYASE HEAT-LIKE PROTEIN 9.9e-75
    HMMSmart PBS lyase HEAT-like repeat 1.9
    HMMSmart PBS lyase HEAT-like repeat 6.9e-06
    HMMSmart PBS lyase HEAT-like repeat 0.015
    HMMSmart PBS lyase HEAT-like repeat 0.0022
    HMMSmart PBS lyase HEAT-like repeat 0.00034
    HMMSmart PBS lyase HEAT-like repeat 2.9e-08

    See the detailed result >

    AT3G58180.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: lyase activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: phycobilisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), PBS lyase HEAT-like repeat (InterPro:IPR004155); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G62530.1); Has 1934 Blast hits to 1064 proteins in 388 species: Archae - 226; Bacteria - 670; Metazoa - 295; Fungi - 345; Plants - 90; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR