F09643

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09643

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09643

Determination of introduced cDNA(s)

  • RAFL14-05-K08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-05-K08 - Resource: pda18099

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-05-K08 - full reading 
    GTATATGCCG CTTAACTCCT ATATTTTCTT TCTCTTTCTC ACAACTTCCC 
    CTAGAAACAC TTTTTTCGGA ATTCGAACGC ACAGCGATCG GATAATGGCG 
    ACGGAGCATA TAACTCGTAC GGGAGATGAA TACAATGTCG AGCTTTTACC 
    TAGTGACGAC GATGCGCCGC CGCTTGAATC GTCTTGGCGT CTCAACCTCG 
    ACGCTTTTCA ACTCCCTTCT TCCACCGGTG GCCGTCACGA CGGACGTACT 
    CGCTTTTCTC GCTATTTTCG TACTCCAAGA AAGGAACGTA GAGTCTCTGA 
    ATACTACAAG AAGCAAGAGA GGCTCCTCGA GGGTTTCAAT GAGATGGAGA 
    CTATCCACGA AAATGGTTTT GCATCTGGTG TTCCAACTGA GGAAGAAATG 
    AAGAAGCTTG CAAAGAGTGA GAGACTTGCG GTTCACATAT CGAACGCAAC 
    AAATTTGGTG CTTTTTGTAG CAAAAGTTTA TGCCTCTATG GAGAGTAGAT 
    CCATGGCTGT GATTGCTTCA ACTTTGGACT CTCTTTTGGA TCTCTTGTCT 
    GGTTTTATCC TCTGGTTTAC AGCTAATGCC ATGAGAAAAC CAAACCAGTT 
    TCACTATCCT ATCGGAAAGC GCCGGATGCA ACCTGTGGGT ATCATTGTGT 
    TTGCTTCCGT GATGGCAACT CTTGGACTGC AAGTTTTGCT AGAGTCAGGA 
    AGGCAACTAG TTGCCAAGAG TGGTATTCAT ATGAATAGCA CAGAGGAGAA 
    ATGGATGATT GGTATCATGG TCTCTGTCAC CATCGTGAAG TTTCTTCTAA 
    TGCTTTATTG CAGAGGATTT CAGAACGAAA TCGTTAGGGC CTATGCTCAA 
    GATCACCTCT TTGACGTCGT CACTAATTCA ATCGGCTTAG CAACAGCTGT 
    CTTGGCCGTC AAATTCTACT GGTGGATTGA TCCTACCGGT GCTATACTTA 
    TTGCTTTGTA CACCATAGCA ACATGGGCAA GAACCGTACT AGAGAACGTC 
    CATTCACTGA TCGGCCGCTC TGCGCCACCA GATTTCTTGG CGAAACTGAC 
    ATTCTTGATA TGGAACCATC ACGAACAAAT TAAGCATATT GACACAGTAA 
    GGGCTTACAC TTTTGGGTCA CACTACTTTG TGGAAGTGGA CATTGTTTTG 
    CCAGAGGACA TGAGACTACA AGAGGCTCAC AACATCGGAG AGACTCTTCA 
    GGAAAAGCTC GAGCAGCTCG CTGAAGTAGA ACGAGCTTTT GTCCACATAG 
    ACTTTGAGTT CACTCATCGT CCTGAACACA AGTGTAACTA GATTTTAAGT 
    AGTAATTTGT AGTACTATAA TTAGTTCTTT AGTTTATGTA CTCTTCGTGT 
    CGTTTTTGTC TATATAGATA CTTGAACGTT GTGCCGTCTC TGTTTATCGA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G16310.1 [+] show detail - Cation efflux family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Cation efflux protein 9.5e-65
    HMMTigr Cation efflux protein 1.6e-29
    Coil coiled-coil 0
    HMMPfam Cation efflux protein 8.3e-45

    See the detailed result >

    AT1G16310.1

    Model type
    Protein coding
    Short Description
    Cation efflux family protein
    Computational Description
    Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163; Bacteria - 4116; Metazoa - 44; Fungi - 281; Plants - 207; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR