F09728

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09728

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09728

Determination of introduced cDNA(s)

  • RAFL04-15-O15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-O15 - Resource: pda16974

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-O15 - full reading 
    CCCGGCCTCC TCCTTCACTC TTCATCTTCA AAGACTGCGC CTTTTAGCTC 
    AGTGAAAAAG GTTCGAGCTT CGGAAACTAT GGCAGCATTC CCTAACCTTA 
    ACTCTGATGC TGGATTGAAG AAGCTCGACG AGCATCTTCT CACTCGCAGT 
    TACATTACTG GATACCAGGC TTCAAAGGAT GATATCACCG TCTTTGCAGC 
    TCTTGCAAAG CCCCCAACTT CACAGTATGT GAACGCTTCT CGTTGGTACA 
    ATCACATTGA TGCCCTCTTG AGGATCTCTG GTGTCTCTGC TGAAGGAAGC 
    GGTGTCATTG TTGAGGGATC AGCTCCTATC ACTGAGGAGG CTGTTGCTAC 
    TCCCCCTGCA GCTGATTCTA AGGATGCTGC GGCTGATGAA GAAGATGATG 
    ATGATGTTGA CCTTTTCGGA GAGGAGACCG AAGAGGAAAA GAAAGCTGCT 
    GAAGAGAGAG CAGCTTCTGT CAAGGCATCT ACAAAGAAGA AGGAATCTGG 
    AAAGTCCTCA GTTTTGATTG ATATCAAACC GTGGGATGAT GAGACTGACA 
    TGAAGAAGCT TGAGGAAGCT GTGAAGTCCA TTCAGATGGA AGGTTTGTTT 
    TGGGGAGCAT CAAAGCTTGT CCCAGTTGGT TATGGTATCA AGAAGTTGCA 
    GATTTTGTGC ACCATTGTTG ACGACCTTGT CTCTATTGAC ACCATGATCG 
    AAGAGCAACT CACTGTTGAA CCGATCAATG AATATGTCCA GAGCTGTGAC 
    ATTGTTGCCT TCAACAAGAT ATGAGGATGG AGAAAGCTTC AAGGAATGTC 
    TGTGTTCATG TGGTCTGGTT CTTCTTCTTC TTCTATATTC AGTTTCCCAA 
    GTTTTTGTAG ACTGTTGTTT TGACTCTGTT ATGGCCTGCC ATCTCTGATC 
    CATTTTGATA TTTAATGAAA AGTGACAATT CAGTATTAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G30230.1 [+] show detail - Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 1.4e-32
    PatternScan Translation elongation factor EF1B, beta/delta chains, conserved site 0
    PatternScan Translation elongation factor EF1B, beta/delta chains, conserved site 0
    Gene3D Translation elongation factor EF1B/ribosomal protein S6 3.5e-38
    Coil coiled-coil 0
    HMMPfam Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 5.8e-32
    HMMSmart Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange 2.2e-39
    HMMPanther ELONGATION FACTOR 1-BETA 6.5e-148
    HMMPanther ELONGATION FACTOR 1-BETA 6.5e-148

    See the detailed result >

    AT1G30230.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
    Computational Description
    Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B/ribosomal protein S6 family protein (TAIR:AT2G18110.1); Has 1011 Blast hits to 1009 proteins in 269 species: Archae - 0; Bacteria - 0; Metazoa - 524; Fungi - 164; Plants - 164; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR