F09729

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09729

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09729

Determination of introduced cDNA(s)

  • RAFL06-15-H18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-H18 - Resource: pda03208

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-H18 - full reading 
    TTGAACCAAA AAATATCTAA AATCACTAAA CCTATCTTCT TAACCAAAAG 
    ATCAATAGAT TACAAAAATG CAGGGAGCTC TGTTTATCAA ACCAACTATT 
    CTTCTTCCTC TTCCTTCTTC AGTTTCTTCT CCAAAACTCA CTTTTCTTCT 
    TCCTCACGCA ACCAAAGCTT CAAGACTCTC ATCTCTCAGA TCAAACAACT 
    CATCATCATC ATCATCCTTA ACGTCTGACC CTAACACCGT CGACTATAAC 
    TCCTCCATCC TTTCTGTTTT TCCAGCTGAA GCATGCGAAG TAATCAGTGG 
    ATACGCTTGT TCTGCTGATA TTTACCCTGA AGTCAAGCTC GATACAAAGC 
    CCGTCTCACG TCCCGTGGCT TCAGAGCCCG TTGACAGAGA ATACGAAGAG 
    TATAACAGCC CCAAAACGGT TTTCCGTGAA GAGGCCTGCG ATGATCTTGG 
    AGGAGAATTC TGTGAACCTG ACTTTCAAAA AGATGCCAAC TAGAAGAAAC 
    AAGATTTTAT GTCATGTGAA TATGTGTTTG TATTTCTACA AGTCTTTGTA 
    ACCACTCCTT AATTTATGAT ATCTAGCTTC ACTACTTAAT CAAGATTGAT 
    GTTATGG

    Gene models with high sequence identity

    1. AT3G26740.1 [+] show detail - CCR-like
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G26740.1

    Model type
    Protein coding
    Short Description
    CCR-like
    Curator Summary
    transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
    Computational Description
    CCR-like (CCL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light regulated Lir1 (InterPro:IPR009856); Has 69 Blast hits to 69 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR