F09749

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09749

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09749

Determination of introduced cDNA(s)

  • RAFL09-09-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-09-J21 - Resource: pda05277

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-09-J21 - full reading
    AAAACTCACA TCTATCTCTA TCTCTCTTCT CTGTCTCTCA CTCTCCACTT 
    TCCGATCACC GACGATTCAA CAAAACATAG TAAAAAACAA AGCAAATTCT
    TTTTTTCTCC TTAGTTACTT CTTCTACAGA TTATCTCAAT CTTACAGAGC
    ACCATGGATC GTTGTATCTA TGGTTGCTCC GTCATTACTA TCTTCTTCTC
    CTTCTTCTTC CTCCTCAATG CATCCGCTTT AGAATCGGGT CACCACAACA
    TAACTGGGTC GGGTCAAATA AACTCAAACT CCGTCCTCGT AGCTCTCCTC
    GATTCTCGTT ACACTGAACT CGCCGAGCTA GTTGAGAAGG CTCTTCTTCT
    CCAAACCCTC GAAGACGCCG TTGGTCGTCA CAATATTACT ATTTTCGCCC
    CACGCAATGA AGCACTCGAG CGTGACCTTG ACCCGGATTT TAAACGGTTC
    TTGCTCCAAC CAGGTAACCT CAAATCTCTC CAAACGCTTC TCTTGTCTCA
    CATTATCCCC AAACGAGTCG GGTCAAACCA ATGGCCTGAG GAGAATTCGG
    GTCGGGTCAA ACACGTCACG TTAGGGCATG ACCAAGTGCT GCATTTGAGT
    AAACTCAAAG GAACAAATGG AAAGAGATTG GTGAATTCCG CTGTAATTAC
    CCGACCCGAT GATTTAACCC GACCCGACGG GTTGATCCAC GGAATCGAAC
    GGCTTTTAAT CCCTCGTTCC GTTCAAGAAG ATTTCAACCG ACGGAGAAAT
    CTCCGATCAA TCTCCGCCGT ATTACCCGAA GGAGCTCCGG AAATCGACCC
    GAGAACCAAC CGTCTCAAGA AATCTGCCAC CGCCGTCTCA GTACCCGCCG
    GATCTCCACC AGTGCTTCCG ATTGAATCCG CTATGGCTCC AGGTCCATCG
    CTAGCTCCGG CTCCGGCTCC AGGACCTGGA GGTGCACACA AACATTTCAA
    CGGCGATGCT CAGGTCAAAG ATTTCATCCA CACATTGTTA CATTACGGTG
    GATACAACGA AATGGCGGAT ATTCTCGTGA ATCTGACGTC ACTTGCGACG
    GAGATGGGTC GATTGGTGTC AGAAGGTTAC GTCCTCACCG TGTTAGCTCC
    GAACGATGAA GCTATGGGGA AATTAACGAC TGATCAGCTT AGCGAGCCCG
    GAGCTCCGGA GCAAATTATG TATTACCACA TTATTCCAGA GTATCAGACG
    GAGGAAAGCA TGTATAATTC TGTTAGGAGA TTTGGGAAGG TGAAGTATGA
    AACGCTGCGT TTTCCTCACA AGGTTGGGGC TAAAGAAGCT GATGGCTCGG
    TTAAATTCGG TTCTGGTGAC CGGTCGGCTT ATTTGTTTGA TCCGGATATT
    TACACCGATG GTCGCATTTC GGTTCAGGGG ATTGATGGTG TTTTGTTCCC
    AGAGGAGAAG GAAGAAGAGA CGGTTAAGAA ACCGACCGGT CCGGTTAAGA
    AAGTTGTTCA GCCGAGAAGA GGGAAGTTGC TGGAAGTAGC ATGTAGTATG
    CTTGGAGCTA TTGGGAAGGA CTCATATCTA AGCAGATGCT GATGAATTCA
    CAAACCTGAA GAGATTATTG AAGGAAAATC TCTCAAGTGT TATCTGTAAA
    CACACACAAA AGGTTCTTTG GAGCAGAATG AAAGATTTAG AAGAAGAGCA
    G

    Gene models with high sequence identity

    1. AT3G11700.1 [+] show detail - FASCICLIN-like arabinogalactan protein 18 precursor
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart FAS1 domain 8.5e-16
    HMMSmart FAS1 domain 5e-16
    superfamily FAS1 domain 1.2e-21
    superfamily FAS1 domain 6.3e-19
    ProfileScan FAS1 domain 16.763
    ProfileScan FAS1 domain 9.349
    HMMPfam FAS1 domain 4.7e-21
    HMMPfam FAS1 domain 1.9e-06

    See the detailed result >

    AT3G11700.1

    Model type
    Protein coding
    Short Description
    FASCICLIN-like arabinogalactan protein 18 precursor
    Computational Description
    FASCICLIN-like arabinogalactan protein 18 precursor (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 488 Blast hits to 470 proteins in 128 species: Archae - 2; Bacteria - 195; Metazoa - 32; Fungi - 4; Plants - 192; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR